Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 AL590787.1-201ENST00000568856 1315 ntBASIC17.76■□□□□ 0.43
RPRD1AQ96P16 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 PTCHD3P3-201ENST00000403073 906 ntBASIC17.76■□□□□ 0.43
RPRD1AQ96P16 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 RPS15P9-201ENST00000494093 319 ntBASIC17.76■□□□□ 0.43
RPRD1AQ96P16 RNA5SP415-201ENST00000517246 115 ntBASIC17.76■□□□□ 0.43
RPRD1AQ96P16 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 AL805961.1-202ENST00000641562 540 ntBASIC17.76■□□□□ 0.43
RPRD1AQ96P16 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.76■□□□□ 0.43
RPRD1AQ96P16 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 AC104109.2-201ENST00000602919 1418 ntBASIC17.75■□□□□ 0.43
RPRD1AQ96P16 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 UNC93B6-202ENST00000528242 690 ntBASIC17.75■□□□□ 0.43
RPRD1AQ96P16 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 AC093525.9-201ENST00000624961 1746 ntBASIC17.75■□□□□ 0.43
RPRD1AQ96P16 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 AC141586.5-201ENST00000624546 2050 ntBASIC17.75■□□□□ 0.43
RPRD1AQ96P16 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPRD1AQ96P16 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.74■□□□□ 0.43
RPRD1AQ96P16 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPRD1AQ96P16 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms