Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HABP4-203ENST00000466976 3150 ntTSL 211.92□□□□□ -0.54e-9■□□□□ 8.4
DDX55Q8NHQ9 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.542e-65■□□□□ 8.4
DDX55Q8NHQ9 RPS7-203ENST00000406376 704 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.541e-27■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-210ENST00000487463 376 ntTSL 211.04□□□□□ -0.644e-9■□□□□ 8.4
DDX55Q8NHQ9 TM4SF1-203ENST00000493298 702 ntTSL 410.95□□□□□ -0.661e-12■□□□□ 8.4
DDX55Q8NHQ9 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC10.3□□□□□ -0.769e-7■□□□□ 8.4
DDX55Q8NHQ9 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC10.14□□□□□ -0.799e-7■□□□□ 8.4
DDX55Q8NHQ9 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.959e-7■□□□□ 8.4
DDX55Q8NHQ9 RPS7-204ENST00000407445 833 ntTSL 2 BASIC8.82□□□□□ -11e-27■□□□□ 8.4
DDX55Q8NHQ9 UQCRC2-204ENST00000563711 2008 ntTSL 28.69□□□□□ -1.029e-7■□□□□ 8.4
DDX55Q8NHQ9 UQCRC2-205ENST00000563898 1406 ntTSL 58.56□□□□□ -1.049e-7■□□□□ 8.4
DDX55Q8NHQ9 TAF7-202ENST00000624699 517 ntTSL 38.49□□□□□ -1.059e-7■□□□□ 8.4
DDX55Q8NHQ9 AZGP1-206ENST00000495765 540 ntTSL 28.27□□□□□ -1.094e-9■□□□□ 8.4
DDX55Q8NHQ9 UQCRC2-211ENST00000567810 582 ntTSL 38□□□□□ -1.139e-7■□□□□ 8.4
DDX55Q8NHQ9 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.161e-27■□□□□ 8.4
DDX55Q8NHQ9 VPS13C-209ENST00000560637 3684 ntTSL 1 (best)6.04□□□□□ -1.446e-8■□□□□ 8.4
DDX55Q8NHQ9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.626e-8■□□□□ 8.4
DDX55Q8NHQ9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.656e-8■□□□□ 8.4
DDX55Q8NHQ9 OAZ1-210ENST00000593012 1357 ntTSL 220.59■□□□□ 0.898e-10■□□□□ 8.4
DDX55Q8NHQ9 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.321e-323■□□□□ 8.4
DDX55Q8NHQ9 TF-204ENST00000461695 990 ntTSL 312.49□□□□□ -0.411e-323■□□□□ 8.4
DDX55Q8NHQ9 TF-207ENST00000467842 4602 ntTSL 1 (best)8.15□□□□□ -1.11e-323■□□□□ 8.4
DDX55Q8NHQ9 PFDN5-217ENST00000552548 497 ntTSL 28.4□□□□□ -1.068e-11■□□□□ 8.4
DDX55Q8NHQ9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.05■■■□□ 2.088e-7■□□□□ 8.4
DDX55Q8NHQ9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.34■■□□□ 1.658e-7■□□□□ 8.4
DDX55Q8NHQ9 CIRBP-223ENST00000589266 616 ntTSL 329.61■■■□□ 2.331e-14■□□□□ 8.4
DDX55Q8NHQ9 DVL1-207ENST00000633096 580 ntTSL 429.15■■■□□ 2.269e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.19e-8■□□□□ 8.4
DDX55Q8NHQ9 CIRBP-219ENST00000588411 619 ntTSL 526.86■■□□□ 1.891e-14■□□□□ 8.4
DDX55Q8NHQ9 KAT2A-203ENST00000586972 852 ntTSL 223.53■■□□□ 1.363e-11■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-204ENST00000571721 813 ntTSL 523.44■■□□□ 1.349e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.189e-8■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-209ENST00000429378 721 ntTSL 322.17■■□□□ 1.141e-7■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.111e-7■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-209ENST00000575659 742 ntTSL 321.3■■□□□ 19e-8■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.14■□□□□ 0.981e-7■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)20.7■□□□□ 0.91e-7■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.23■□□□□ 0.831e-7■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.97■□□□□ 0.791e-7■□□□□ 8.4
DDX55Q8NHQ9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.63e-11■□□□□ 8.4
DDX55Q8NHQ9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.549e-8■□□□□ 8.4
DDX55Q8NHQ9 EEF1D-232ENST00000530445 1217 ntTSL 218.23■□□□□ 0.515e-18■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.499e-8■□□□□ 8.4
DDX55Q8NHQ9 MIIP-206ENST00000492256 806 ntTSL 217.92■□□□□ 0.469e-8■□□□□ 8.4
DDX55Q8NHQ9 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.439e-8■□□□□ 8.4
DDX55Q8NHQ9 SIRT2-213ENST00000462654 2539 ntTSL 1 (best)17.67■□□□□ 0.423e-11■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-213ENST00000464711 2134 ntTSL 217.26■□□□□ 0.351e-7■□□□□ 8.4
DDX55Q8NHQ9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.329e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-205ENST00000572105 1168 ntTSL 516.85■□□□□ 0.299e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-203ENST00000571691 761 ntTSL 316.53■□□□□ 0.249e-8■□□□□ 8.4
DDX55Q8NHQ9 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.49■□□□□ 0.233e-11■□□□□ 8.4
DDX55Q8NHQ9 SIRT2-215ENST00000479290 4734 ntTSL 216.36■□□□□ 0.213e-11■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-202ENST00000570382 471 ntTSL 415.9■□□□□ 0.149e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-211ENST00000575994 856 ntTSL 315.79■□□□□ 0.129e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-213ENST00000576214 1024 ntTSL 515.76■□□□□ 0.119e-8■□□□□ 8.4
DDX55Q8NHQ9 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC15.12■□□□□ 0.019e-8■□□□□ 8.4
DDX55Q8NHQ9 LUC7L-217ENST00000490762 2643 ntTSL 1 (best)14.94□□□□□ -0.021e-7■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-215ENST00000576917 1958 ntTSL 514.87□□□□□ -0.039e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.039e-8■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-214ENST00000576544 1720 ntTSL 514.77□□□□□ -0.059e-8■□□□□ 8.4
DDX55Q8NHQ9 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.073e-11■□□□□ 8.4
DDX55Q8NHQ9 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.073e-11■□□□□ 8.4
DDX55Q8NHQ9 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.129e-8■□□□□ 8.4
DDX55Q8NHQ9 KAT2A-202ENST00000465682 2990 ntTSL 513.67□□□□□ -0.223e-11■□□□□ 8.4
DDX55Q8NHQ9 AP2M1-222ENST00000621863 1305 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.459e-8■□□□□ 8.4
DDX55Q8NHQ9 AP2M1-208ENST00000442686 673 ntTSL 211.41□□□□□ -0.589e-8■□□□□ 8.4
DDX55Q8NHQ9 AP2M1-218ENST00000480260 582 ntTSL 211.16□□□□□ -0.629e-8■□□□□ 8.4
DDX55Q8NHQ9 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.643e-11■□□□□ 8.4
DDX55Q8NHQ9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.148e-29■□□□□ 8.4
DDX55Q8NHQ9 RPS14-205ENST00000519690 3119 ntTSL 216.23■□□□□ 0.198e-29■□□□□ 8.4
DDX55Q8NHQ9 RPS14-202ENST00000401695 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.228e-29■□□□□ 8.4
DDX55Q8NHQ9 C3-216ENST00000601475 368 ntTSL 211.25□□□□□ -0.617e-38■□□□□ 8.4
DDX55Q8NHQ9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.475e-47■□□□□ 8.4
DDX55Q8NHQ9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.392e-6■□□□□ 8.4
DDX55Q8NHQ9 RPS14-206ENST00000519855 398 ntTSL 216.87■□□□□ 0.291e-31■□□□□ 8.4
DDX55Q8NHQ9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.921e-10■□□□□ 8.4
DDX55Q8NHQ9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.2■□□□□ 0.821e-10■□□□□ 8.4
DDX55Q8NHQ9 KCNH2-204ENST00000461280 2430 ntTSL 1 (best)20.19■□□□□ 0.821e-10■□□□□ 8.4
DDX55Q8NHQ9 KCNH2-206ENST00000532957 3374 ntTSL 219.46■□□□□ 0.711e-10■□□□□ 8.4
DDX55Q8NHQ9 KCNH2-205ENST00000473610 2782 ntTSL 218.66■□□□□ 0.581e-10■□□□□ 8.4
DDX55Q8NHQ9 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.91■□□□□ 0.622e-6■□□□□ 8.4
DDX55Q8NHQ9 CCDC12-211ENST00000604367 2412 nt16.57■□□□□ 0.242e-6■□□□□ 8.4
DDX55Q8NHQ9 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.222e-6■□□□□ 8.4
DDX55Q8NHQ9 OGFOD1-207ENST00000566157 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.482e-6■□□□□ 8.4
DDX55Q8NHQ9 MAN2A2-221ENST00000560451 5124 ntTSL 1 (best)21.31■■□□□ 15e-11■□□□□ 8.4
DDX55Q8NHQ9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.475e-11■□□□□ 8.4
DDX55Q8NHQ9 MAN2A2-204ENST00000558161 4918 ntTSL 1 (best)13.64□□□□□ -0.235e-11■□□□□ 8.4
DDX55Q8NHQ9 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.425e-11■□□□□ 8.4
DDX55Q8NHQ9 MAN2A2-215ENST00000559704 449 ntTSL 35.19□□□□□ -1.585e-11■□□□□ 8.4
DDX55Q8NHQ9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.37e-10■□□□□ 8.4
DDX55Q8NHQ9 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.07□□□□□ -1.767e-10■□□□□ 8.4
DDX55Q8NHQ9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.551e-25■□□□□ 8.3
DDX55Q8NHQ9 NOP53-207ENST00000598681 1358 ntTSL 526.71■■□□□ 1.871e-25■□□□□ 8.3
DDX55Q8NHQ9 NOP53-212ENST00000600410 4185 ntTSL 218.47■□□□□ 0.551e-25■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-231ENST00000639599 1283 ntTSL 518.29■□□□□ 0.523e-13■□□□□ 8.3
DDX55Q8NHQ9 NOP53-203ENST00000594525 876 ntTSL 1 (best)16.07■□□□□ 0.161e-25■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.13e-13■□□□□ 8.3
DDX55Q8NHQ9 NOP53-209ENST00000599253 689 ntTSL 215.57■□□□□ 0.081e-25■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.023e-13■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC15.02□□□□□ -0.013e-13■□□□□ 8.3
Retrieved 100 of 15,504 protein–RNA pairs in 357.2 ms