RNA–Protein interactions for RNA: ENST00000375759.7

SPEN-201, Transcript of spen family transcriptional repressor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPEN, Length 12,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-201ENST00000375759 DCAF8L2P0C7V8 631 aa16.26■□□□□ 0.19
SPEN-201ENST00000375759 PELP1Q8IZL8 1130 aaKnown RBP16.01■□□□□ 0.15
SPEN-201ENST00000375759 SUPT5HO00267 1087 aaKnown RBP15.66■□□□□ 0.1
SPEN-201ENST00000375759 APLP2Q06481 763 aa15.27■□□□□ 0.04
SPEN-201ENST00000375759 MYT1Q01538 1121 aa15.25■□□□□ 0.03
SPEN-201ENST00000375759 CCER1Q8TC90 406 aaPredicted RBP15.24■□□□□ 0.03
SPEN-201ENST00000375759 NISCHQ9Y2I1 1504 aa15.24■□□□□ 0.03
SPEN-201ENST00000375759 ERICH6Q7L0X2 663 aa15.24■□□□□ 0.03
SPEN-201ENST00000375759 SHROOM4Q9ULL8 1493 aa15.21■□□□□ 0.03
SPEN-201ENST00000375759 CENPBP07199 599 aaPredicted RBP15.2■□□□□ 0.02
SPEN-201ENST00000375759 EHMT2Q96KQ7 1210 aa15.19■□□□□ 0.02
SPEN-201ENST00000375759 ZEB1P37275 1124 aaPredicted RBP15.07■□□□□ 0
SPEN-201ENST00000375759 PCGF6Q9BYE7 350 aa15.02■□□□□ -0
SPEN-201ENST00000375759 FAM9AQ8IZU1 332 aaPredicted RBP14.96□□□□□ -0.01
SPEN-201ENST00000375759 NEFLP07196 543 aa14.86□□□□□ -0.03
SPEN-201ENST00000375759 TTBK1Q5TCY1 1321 aaPredicted RBP14.78□□□□□ -0.04
SPEN-201ENST00000375759 YTHDC1Q96MU7 727 aaKnown RBP14.6□□□□□ -0.07
SPEN-201ENST00000375759 TRIM41Q8WV44 630 aa14.57□□□□□ -0.08
SPEN-201ENST00000375759 DAXXQ9UER7 740 aaPredicted RBP14.54□□□□□ -0.08
SPEN-201ENST00000375759 RANGAP1P46060 587 aaPredicted RBP14.5□□□□□ -0.09
SPEN-201ENST00000375759 ATP1B4Q9UN42 357 aaPredicted RBP14.48□□□□□ -0.09
SPEN-201ENST00000375759 UBTFP17480 764 aaKnown RBP14.46□□□□□ -0.1
SPEN-201ENST00000375759 TRIM26Q12899 539 aaPredicted RBP14.38□□□□□ -0.11
SPEN-201ENST00000375759 HRCP23327 699 aa14.29□□□□□ -0.12
SPEN-201ENST00000375759 RTL5Q5HYW3 569 aaPredicted RBP14.25□□□□□ -0.13
SPEN-201ENST00000375759 ZNF316A6NFI3 1004 aaPredicted RBP14.17□□□□□ -0.14
SPEN-201ENST00000375759 PPARGC1BQ86YN6 1023 aaKnown RBP14.14□□□□□ -0.15
SPEN-201ENST00000375759 POLR3GLQ9BT43 218 aa14.08□□□□□ -0.16
SPEN-201ENST00000375759 CLSPNQ9HAW4 1339 aa14.03□□□□□ -0.16
SPEN-201ENST00000375759 DIEXFQ68CQ4 756 aaKnown RBP14.02□□□□□ -0.16
SPEN-201ENST00000375759 ITGAEP38570 1179 aa14□□□□□ -0.17
SPEN-201ENST00000375759 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
SPEN-201ENST00000375759 MYT1LQ9UL68 1186 aa13.92□□□□□ -0.18
SPEN-201ENST00000375759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.88□□□□□ -0.19
SPEN-201ENST00000375759 CNGB1Q14028 1251 aaPredicted RBP13.87□□□□□ -0.19
SPEN-201ENST00000375759 CDK11AQ9UQ88 783 aaPredicted RBP13.86□□□□□ -0.19
SPEN-201ENST00000375759 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.19
SPEN-201ENST00000375759 LOC105371045A0A1W2PR82 267 aa13.83□□□□□ -0.2
SPEN-201ENST00000375759 GTF3C3Q9Y5Q9 886 aa13.81□□□□□ -0.2
SPEN-201ENST00000375759 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
SPEN-201ENST00000375759 ANP32CO43423 234 aa13.74□□□□□ -0.21
SPEN-201ENST00000375759 ZBTB47Q9UFB7 747 aaPredicted RBP13.74□□□□□ -0.21
SPEN-201ENST00000375759 BCANQ96GW7 911 aa13.71□□□□□ -0.21
SPEN-201ENST00000375759 ANP32AP39687 249 aaKnown RBP13.69□□□□□ -0.22
SPEN-201ENST00000375759 FAM50AQ14320 339 aaKnown RBP13.66□□□□□ -0.22
SPEN-201ENST00000375759 GLIPR1L2Q4G1C9 344 aa13.61□□□□□ -0.23
SPEN-201ENST00000375759 NEUROD1Q13562 356 aa13.61□□□□□ -0.23
SPEN-201ENST00000375759 TRIM52Q96A61 297 aa13.61□□□□□ -0.23
SPEN-201ENST00000375759 CANXP27824 592 aaKnown RBP13.6□□□□□ -0.23
SPEN-201ENST00000375759 ANP32BQ92688 251 aaKnown RBP13.6□□□□□ -0.23
SPEN-201ENST00000375759 ACIN1Q9UKV3 1341 aaKnown RBP13.58□□□□□ -0.24
SPEN-201ENST00000375759 EIF5BO60841 1220 aaKnown RBP13.54□□□□□ -0.24
SPEN-201ENST00000375759 NEFMP07197 916 aa13.5□□□□□ -0.25
SPEN-201ENST00000375759 ZNF326Q5BKZ1 582 aaKnown RBP13.47□□□□□ -0.25
SPEN-201ENST00000375759 NPM2Q86SE8 214 aaKnown RBP13.44□□□□□ -0.26
SPEN-201ENST00000375759 HSP90AA1P07900 732 aaKnown RBP13.43□□□□□ -0.26
SPEN-201ENST00000375759 UPF2Q9HAU5 1272 aaKnown RBP13.43□□□□□ -0.26
SPEN-201ENST00000375759 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
SPEN-201ENST00000375759 BCL11AQ9H165 835 aa13.39□□□□□ -0.27
SPEN-201ENST00000375759 FKBP8Q14318 412 aa13.35□□□□□ -0.27
SPEN-201ENST00000375759 NBR1Q14596 966 aa13.25□□□□□ -0.29
SPEN-201ENST00000375759 HNRNPUQ00839 825 aaKnown RBP eCLIP13.25□□□□□ -0.29
SPEN-201ENST00000375759 TONSLQ96HA7 1378 aa13.24□□□□□ -0.29
SPEN-201ENST00000375759 CCDC136Q96JN2 1154 aa13.23□□□□□ -0.29
SPEN-201ENST00000375759 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.22□□□□□ -0.29
SPEN-201ENST00000375759 DCAF1Q9Y4B6 1507 aa13.19□□□□□ -0.3
SPEN-201ENST00000375759 ANP32EQ9BTT0 268 aa13.16□□□□□ -0.3
SPEN-201ENST00000375759 FAM9BQ8IZU0 186 aa13.15□□□□□ -0.3
SPEN-201ENST00000375759 TNNT2P45379 298 aaPredicted RBP13.13□□□□□ -0.31
SPEN-201ENST00000375759 DDRGK1Q96HY6 314 aa13.13□□□□□ -0.31
SPEN-201ENST00000375759 TMC1Q8TDI8 760 aa13.12□□□□□ -0.31
SPEN-201ENST00000375759 ARXQ96QS3 562 aa13.12□□□□□ -0.31
SPEN-201ENST00000375759 TRIM44Q96DX7 344 aaPredicted RBP13.12□□□□□ -0.31
SPEN-201ENST00000375759 DDX10Q13206 875 aaKnown RBP13.11□□□□□ -0.31
SPEN-201ENST00000375759 BECN1Q14457 450 aa13.11□□□□□ -0.31
SPEN-201ENST00000375759 CSRNP3Q8WYN3 585 aa13.09□□□□□ -0.31
SPEN-201ENST00000375759 WDR43Q15061 677 aaKnown RBP eCLIP13.06□□□□□ -0.328e-6■■□□□ 13.7
SPEN-201ENST00000375759 CDK11BP21127 795 aaKnown RBP13.06□□□□□ -0.32
SPEN-201ENST00000375759 MYH16Q9H6N6 1097 aa13.06□□□□□ -0.32
SPEN-201ENST00000375759 FBLN2P98095 1184 aa13.06□□□□□ -0.32
SPEN-201ENST00000375759 GOLGA6L22H0YM25 854 aa13.05□□□□□ -0.32
SPEN-201ENST00000375759 ZNF777Q9ULD5 760 aaPredicted RBP13.05□□□□□ -0.32
SPEN-201ENST00000375759 SCAF1Q9H7N4 1312 aaKnown RBP13.05□□□□□ -0.32
SPEN-201ENST00000375759 NCLP19338 710 aaKnown RBP13.03□□□□□ -0.32
SPEN-201ENST00000375759 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
SPEN-201ENST00000375759 SALL2Q9Y467 1007 aaPredicted RBP13.03□□□□□ -0.32
SPEN-201ENST00000375759 MRS2Q9HD23 443 aa13.02□□□□□ -0.33
SPEN-201ENST00000375759 ERICH6BQ5W0A0 696 aa13□□□□□ -0.33
SPEN-201ENST00000375759 ESF1Q9H501 851 aaKnown RBP12.98□□□□□ -0.33
SPEN-201ENST00000375759 ARID3CA6NKF2 412 aa12.96□□□□□ -0.33
SPEN-201ENST00000375759 STAG3Q9UJ98 1225 aa12.96□□□□□ -0.33
SPEN-201ENST00000375759 PABPN1Q86U42 306 aaKnown RBP eCLIP12.96□□□□□ -0.33
SPEN-201ENST00000375759 CCDC180Q9P1Z9 1646 aa12.94□□□□□ -0.34
SPEN-201ENST00000375759 PPM1GO15355 546 aaPredicted RBP12.94□□□□□ -0.34
SPEN-201ENST00000375759 MIER1Q8N108 512 aa12.94□□□□□ -0.34
SPEN-201ENST00000375759 ABCC9O60706 1549 aa12.93□□□□□ -0.34
SPEN-201ENST00000375759 PTMAP06454 111 aaKnown RBP12.93□□□□□ -0.34
SPEN-201ENST00000375759 CHGAP10645 457 aaKnown RBP12.92□□□□□ -0.34
SPEN-201ENST00000375759 IRX6P78412 446 aaPredicted RBP12.92□□□□□ -0.34
SPEN-201ENST00000375759 DNTTIP2Q5QJE6 756 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms