RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 NISCHQ9Y2I1 1504 aa7.69□□□□□ -1.18
VPS13C-202ENST00000261517 DCAF8L2P0C7V8 631 aa7.12□□□□□ -1.27
VPS13C-202ENST00000261517 FAM9AQ8IZU1 332 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-202ENST00000261517 PELP1Q8IZL8 1130 aaKnown RBP6.81□□□□□ -1.32
VPS13C-202ENST00000261517 CCDC180Q9P1Z9 1646 aa6.77□□□□□ -1.33
VPS13C-202ENST00000261517 APLP2Q06481 763 aa6.76□□□□□ -1.33
VPS13C-202ENST00000261517 SUPT5HO00267 1087 aaKnown RBP6.75□□□□□ -1.33
VPS13C-202ENST00000261517 ZEB1P37275 1124 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-202ENST00000261517 SHROOM4Q9ULL8 1493 aa6.64□□□□□ -1.35
VPS13C-202ENST00000261517 TRIM41Q8WV44 630 aa6.51□□□□□ -1.37
VPS13C-202ENST00000261517 CCER1Q8TC90 406 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-202ENST00000261517 CENPBP07199 599 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-202ENST00000261517 NACADO15069 1562 aa6.41□□□□□ -1.38
VPS13C-202ENST00000261517 ZCCHC6Q5VYS8 1495 aaKnown RBP6.41□□□□□ -1.38
VPS13C-202ENST00000261517 DCAF1Q9Y4B6 1507 aa6.4□□□□□ -1.38
VPS13C-202ENST00000261517 RB1CC1Q8TDY2 1594 aa6.4□□□□□ -1.38
VPS13C-202ENST00000261517 MYT1Q01538 1121 aa6.39□□□□□ -1.39
VPS13C-202ENST00000261517 UBTFP17480 764 aaKnown RBP6.38□□□□□ -1.39
VPS13C-202ENST00000261517 ACIN1Q9UKV3 1341 aaKnown RBP6.37□□□□□ -1.39
VPS13C-202ENST00000261517 TRIM26Q12899 539 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-202ENST00000261517 MYO15BQ96JP2 1530 aa6.32□□□□□ -1.4
VPS13C-202ENST00000261517 ABCC9O60706 1549 aa6.29□□□□□ -1.4
VPS13C-202ENST00000261517 NEFLP07196 543 aa6.28□□□□□ -1.4
VPS13C-202ENST00000261517 EEA1Q15075 1411 aa6.24□□□□□ -1.41
VPS13C-202ENST00000261517 PCGF6Q9BYE7 350 aa6.23□□□□□ -1.41
VPS13C-202ENST00000261517 ATP1B4Q9UN42 357 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-202ENST00000261517 SCRIBQ14160 1630 aa6.2□□□□□ -1.42
VPS13C-202ENST00000261517 CHIC1Q5VXU3 224 aa6.19□□□□□ -1.42
VPS13C-202ENST00000261517 ERICH6Q7L0X2 663 aa6.19□□□□□ -1.42
VPS13C-202ENST00000261517 YTHDC1Q96MU7 727 aaKnown RBP6.19□□□□□ -1.42
VPS13C-202ENST00000261517 CDK11AQ9UQ88 783 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-202ENST00000261517 CLSPNQ9HAW4 1339 aa6.17□□□□□ -1.42
VPS13C-202ENST00000261517 BAZ1AQ9NRL2 1556 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-202ENST00000261517 EHMT2Q96KQ7 1210 aa6.12□□□□□ -1.43
VPS13C-202ENST00000261517 SMARCA2P51531 1590 aa6.11□□□□□ -1.43
VPS13C-202ENST00000261517 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-202ENST00000261517 HNRNPUL2Q1KMD3 747 aaKnown RBP6.1□□□□□ -1.43
VPS13C-202ENST00000261517 HRCP23327 699 aa6.08□□□□□ -1.44
VPS13C-202ENST00000261517 DAXXQ9UER7 740 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-202ENST00000261517 CSRNP3Q8WYN3 585 aa6.07□□□□□ -1.44
VPS13C-202ENST00000261517 BAZ1BQ9UIG0 1483 aaKnown RBP6.07□□□□□ -1.44
VPS13C-202ENST00000261517 RSF1Q96T23 1441 aaPredicted RBP6.06□□□□□ -1.44
VPS13C-202ENST00000261517 MYT1LQ9UL68 1186 aa6.06□□□□□ -1.44
VPS13C-202ENST00000261517 RANGAP1P46060 587 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-202ENST00000261517 NEFMP07197 916 aa6.04□□□□□ -1.44
VPS13C-202ENST00000261517 GOLGA3Q08378 1498 aa6.02□□□□□ -1.45
VPS13C-202ENST00000261517 PABPN1Q86U42 306 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13C-202ENST00000261517 SLC24A1O60721 1099 aa6.02□□□□□ -1.45
VPS13C-202ENST00000261517 KIF27Q86VH2 1401 aa6.01□□□□□ -1.45
VPS13C-202ENST00000261517 CEP164Q9UPV0 1460 aa6.01□□□□□ -1.45
VPS13C-202ENST00000261517 ABCC8Q09428 1581 aa5.99□□□□□ -1.45
VPS13C-202ENST00000261517 FHAD1B1AJZ9 1412 aa5.99□□□□□ -1.45
VPS13C-202ENST00000261517 TTBK1Q5TCY1 1321 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-202ENST00000261517 FAM50AQ14320 339 aaKnown RBP5.98□□□□□ -1.45
VPS13C-202ENST00000261517 ANP32CO43423 234 aa5.97□□□□□ -1.45
VPS13C-202ENST00000261517 NPM1P06748 294 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS13C-202ENST00000261517 EIF5BO60841 1220 aaKnown RBP5.97□□□□□ -1.45
VPS13C-202ENST00000261517 WRNQ14191 1432 aaPredicted RBP eCLIP5.96□□□□□ -1.45
VPS13C-202ENST00000261517 TOP2AP11388 1531 aaKnown RBP5.96□□□□□ -1.46
VPS13C-202ENST00000261517 TRIM52Q96A61 297 aa5.95□□□□□ -1.46
VPS13C-202ENST00000261517 ZBTB47Q9UFB7 747 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-202ENST00000261517 TNIKQ9UKE5 1360 aa5.94□□□□□ -1.46
VPS13C-202ENST00000261517 CLIP1P30622 1438 aa5.94□□□□□ -1.46
VPS13C-202ENST00000261517 CEP162Q5TB80 1403 aa5.93□□□□□ -1.46
VPS13C-202ENST00000261517 PDS5BQ9NTI5 1447 aa5.93□□□□□ -1.46
VPS13C-202ENST00000261517 DIEXFQ68CQ4 756 aaKnown RBP5.93□□□□□ -1.46
VPS13C-202ENST00000261517 ESF1Q9H501 851 aaKnown RBP5.93□□□□□ -1.46
VPS13C-202ENST00000261517 ITGAEP38570 1179 aa5.91□□□□□ -1.46
VPS13C-202ENST00000261517 TONSLQ96HA7 1378 aa5.91□□□□□ -1.46
VPS13C-202ENST00000261517 MTUS2Q5JR59 1369 aa5.91□□□□□ -1.46
VPS13C-202ENST00000261517 TIMELESSQ9UNS1 1208 aa5.9□□□□□ -1.46
VPS13C-202ENST00000261517 ZNF316A6NFI3 1004 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-202ENST00000261517 SMARCA4P51532 1647 aa5.9□□□□□ -1.47
VPS13C-202ENST00000261517 LOC105371045A0A1W2PR82 267 aa5.9□□□□□ -1.47
VPS13C-202ENST00000261517 CDCA8Q53HL2 280 aa5.89□□□□□ -1.47
VPS13C-202ENST00000261517 TSPY4P0CV99 314 aa5.88□□□□□ -1.47
VPS13C-202ENST00000261517 TSPY10P0CW01 314 aa5.88□□□□□ -1.47
VPS13C-202ENST00000261517 RTL5Q5HYW3 569 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-202ENST00000261517 ERCC6Q03468 1493 aa5.88□□□□□ -1.47
VPS13C-202ENST00000261517 CHMP7Q8WUX9 453 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-202ENST00000261517 FBLN2P98095 1184 aa5.87□□□□□ -1.47
VPS13C-202ENST00000261517 FMN1Q68DA7 1419 aa5.86□□□□□ -1.47
VPS13C-202ENST00000261517 CARMIL2Q6F5E8 1435 aa5.86□□□□□ -1.47
VPS13C-202ENST00000261517 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-202ENST00000261517 POLR3GLQ9BT43 218 aa5.84□□□□□ -1.47
VPS13C-202ENST00000261517 SLC4A1APQ9BWU0 796 aaKnown RBP5.84□□□□□ -1.48
VPS13C-202ENST00000261517 ARID4BQ4LE39 1312 aaPredicted RBP5.84□□□□□ -1.48
VPS13C-202ENST00000261517 PLEKHD1A6NEE1 506 aa5.84□□□□□ -1.48
VPS13C-202ENST00000261517 CHMP4BQ9H444 224 aaKnown RBP5.82□□□□□ -1.48
VPS13C-202ENST00000261517 RSPH4AQ5TD94 716 aa5.82□□□□□ -1.48
VPS13C-202ENST00000261517 KANK1Q14678 1352 aa5.82□□□□□ -1.48
VPS13C-202ENST00000261517 HDGFP51858 240 aaKnown RBP5.81□□□□□ -1.48
VPS13C-202ENST00000261517 UPF2Q9HAU5 1272 aaKnown RBP5.8□□□□□ -1.48
VPS13C-202ENST00000261517 CANXP27824 592 aaKnown RBP5.8□□□□□ -1.48
VPS13C-202ENST00000261517 STAG3Q9UJ98 1225 aa5.79□□□□□ -1.48
VPS13C-202ENST00000261517 PNNQ9H307 717 aaKnown RBP5.79□□□□□ -1.48
VPS13C-202ENST00000261517 HMGXB3Q12766 1538 aa5.79□□□□□ -1.48
VPS13C-202ENST00000261517 NEUROD1Q13562 356 aa5.79□□□□□ -1.48
VPS13C-202ENST00000261517 CCDC88BA6NC98 1476 aa5.79□□□□□ -1.48
VPS13C-202ENST00000261517 CARMIL1Q5VZK9 1371 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms