RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 NISCHQ9Y2I1 1504 aa8.25□□□□□ -1.09
VPS13C-201ENST00000249837 DCAF8L2P0C7V8 631 aa7.94□□□□□ -1.14
VPS13C-201ENST00000249837 SUPT5HO00267 1087 aaKnown RBP7.85□□□□□ -1.15
VPS13C-201ENST00000249837 SHROOM4Q9ULL8 1493 aa7.82□□□□□ -1.16
VPS13C-201ENST00000249837 EHMT2Q96KQ7 1210 aa7.54□□□□□ -1.2
VPS13C-201ENST00000249837 PCGF6Q9BYE7 350 aa7.49□□□□□ -1.21
VPS13C-201ENST00000249837 FAM9AQ8IZU1 332 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-201ENST00000249837 TTBK1Q5TCY1 1321 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-201ENST00000249837 HRCP23327 699 aa7.27□□□□□ -1.25
VPS13C-201ENST00000249837 CHIC1Q5VXU3 224 aa7.26□□□□□ -1.25
VPS13C-201ENST00000249837 LOC105371045A0A1W2PR82 267 aa7.25□□□□□ -1.25
VPS13C-201ENST00000249837 PPARGC1BQ86YN6 1023 aaKnown RBP7.23□□□□□ -1.25
VPS13C-201ENST00000249837 TRIM41Q8WV44 630 aa7.21□□□□□ -1.26
VPS13C-201ENST00000249837 ZEB1P37275 1124 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-201ENST00000249837 TRIM26Q12899 539 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-201ENST00000249837 CCER1Q8TC90 406 aaPredicted RBP7.12□□□□□ -1.27
VPS13C-201ENST00000249837 RANGAP1P46060 587 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-201ENST00000249837 APLP2Q06481 763 aa7.08□□□□□ -1.28
VPS13C-201ENST00000249837 CENPBP07199 599 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-201ENST00000249837 UBTFP17480 764 aaKnown RBP7.04□□□□□ -1.28
VPS13C-201ENST00000249837 YTHDC1Q96MU7 727 aaKnown RBP7.03□□□□□ -1.28
VPS13C-201ENST00000249837 PELP1Q8IZL8 1130 aaKnown RBP7.02□□□□□ -1.29
VPS13C-201ENST00000249837 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.97□□□□□ -1.29
VPS13C-201ENST00000249837 MYO15BQ96JP2 1530 aa6.96□□□□□ -1.3
VPS13C-201ENST00000249837 HNRNPUL2Q1KMD3 747 aaKnown RBP6.94□□□□□ -1.3
VPS13C-201ENST00000249837 ATP1B4Q9UN42 357 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-201ENST00000249837 DIEXFQ68CQ4 756 aaKnown RBP6.87□□□□□ -1.31
VPS13C-201ENST00000249837 ZCCHC6Q5VYS8 1495 aaKnown RBP6.86□□□□□ -1.31
VPS13C-201ENST00000249837 DCAF1Q9Y4B6 1507 aa6.85□□□□□ -1.31
VPS13C-201ENST00000249837 ITGAEP38570 1179 aa6.84□□□□□ -1.31
VPS13C-201ENST00000249837 ABCC9O60706 1549 aa6.82□□□□□ -1.32
VPS13C-201ENST00000249837 GTF3C3Q9Y5Q9 886 aa6.8□□□□□ -1.32
VPS13C-201ENST00000249837 SCRIBQ14160 1630 aa6.79□□□□□ -1.32
VPS13C-201ENST00000249837 NEFLP07196 543 aa6.78□□□□□ -1.32
VPS13C-201ENST00000249837 ACIN1Q9UKV3 1341 aaKnown RBP6.77□□□□□ -1.33
VPS13C-201ENST00000249837 CCDC180Q9P1Z9 1646 aa6.77□□□□□ -1.33
VPS13C-201ENST00000249837 PABPN1Q86U42 306 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS13C-201ENST00000249837 SCAF1Q9H7N4 1312 aaKnown RBP6.76□□□□□ -1.33
VPS13C-201ENST00000249837 MYT1Q01538 1121 aa6.74□□□□□ -1.33
VPS13C-201ENST00000249837 ERICH6Q7L0X2 663 aa6.74□□□□□ -1.33
VPS13C-201ENST00000249837 ZNF316A6NFI3 1004 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-201ENST00000249837 NEUROD1Q13562 356 aa6.71□□□□□ -1.34
VPS13C-201ENST00000249837 CSRNP3Q8WYN3 585 aa6.68□□□□□ -1.34
VPS13C-201ENST00000249837 CNGB1Q14028 1251 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-201ENST00000249837 BCANQ96GW7 911 aa6.67□□□□□ -1.34
VPS13C-201ENST00000249837 FAM50AQ14320 339 aaKnown RBP6.65□□□□□ -1.34
VPS13C-201ENST00000249837 POLR3GLQ9BT43 218 aa6.65□□□□□ -1.35
VPS13C-201ENST00000249837 RSF1Q96T23 1441 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-201ENST00000249837 MIER1Q8N108 512 aa6.62□□□□□ -1.35
VPS13C-201ENST00000249837 P3H3Q8IVL6 736 aa6.57□□□□□ -1.36
VPS13C-201ENST00000249837 RB1CC1Q8TDY2 1594 aa6.55□□□□□ -1.36
VPS13C-201ENST00000249837 CEP162Q5TB80 1403 aa6.53□□□□□ -1.36
VPS13C-201ENST00000249837 TRIM52Q96A61 297 aa6.53□□□□□ -1.36
VPS13C-201ENST00000249837 CECR2Q9BXF3 1484 aa6.53□□□□□ -1.36
VPS13C-201ENST00000249837 DDX10Q13206 875 aaKnown RBP6.52□□□□□ -1.37
VPS13C-201ENST00000249837 ANP32CO43423 234 aa6.52□□□□□ -1.37
VPS13C-201ENST00000249837 FKBP8Q14318 412 aa6.51□□□□□ -1.37
VPS13C-201ENST00000249837 CLIP1P30622 1438 aa6.5□□□□□ -1.37
VPS13C-201ENST00000249837 ARID3CA6NKF2 412 aa6.48□□□□□ -1.37
VPS13C-201ENST00000249837 CDK11AQ9UQ88 783 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-201ENST00000249837 ZNF326Q5BKZ1 582 aaKnown RBP6.48□□□□□ -1.37
VPS13C-201ENST00000249837 HIRIP3Q9BW71 556 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-201ENST00000249837 WIZO95785 1651 aa6.46□□□□□ -1.38
VPS13C-201ENST00000249837 SOGA1O94964 1423 aa6.46□□□□□ -1.38
VPS13C-201ENST00000249837 MROH2BQ7Z745 1585 aa6.45□□□□□ -1.38
VPS13C-201ENST00000249837 TNIKQ9UKE5 1360 aa6.45□□□□□ -1.38
VPS13C-201ENST00000249837 NACADO15069 1562 aa6.44□□□□□ -1.38
VPS13C-201ENST00000249837 IRX6P78412 446 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-201ENST00000249837 ABCC8Q09428 1581 aa6.44□□□□□ -1.38
VPS13C-201ENST00000249837 GOLGA3Q08378 1498 aa6.43□□□□□ -1.38
VPS13C-201ENST00000249837 HNRNPUQ00839 825 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS13C-201ENST00000249837 WRNQ14191 1432 aaPredicted RBP eCLIP6.41□□□□□ -1.38
VPS13C-201ENST00000249837 TONSLQ96HA7 1378 aa6.41□□□□□ -1.38
VPS13C-201ENST00000249837 EEA1Q15075 1411 aa6.41□□□□□ -1.38
VPS13C-201ENST00000249837 CCDC88BA6NC98 1476 aa6.41□□□□□ -1.38
VPS13C-201ENST00000249837 MYT1LQ9UL68 1186 aa6.41□□□□□ -1.38
VPS13C-201ENST00000249837 DAXXQ9UER7 740 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-201ENST00000249837 CLSPNQ9HAW4 1339 aa6.4□□□□□ -1.39
VPS13C-201ENST00000249837 RTL5Q5HYW3 569 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-201ENST00000249837 CHIC2Q9UKJ5 165 aa6.39□□□□□ -1.39
VPS13C-201ENST00000249837 FAM9BQ8IZU0 186 aa6.39□□□□□ -1.39
VPS13C-201ENST00000249837 BAZ1AQ9NRL2 1556 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-201ENST00000249837 SENP3-EIF4A1A0A087X0R7 540 aa6.38□□□□□ -1.39
VPS13C-201ENST00000249837 SIN3AQ96ST3 1273 aa6.37□□□□□ -1.39
VPS13C-201ENST00000249837 NPM2Q86SE8 214 aaKnown RBP6.37□□□□□ -1.39
VPS13C-201ENST00000249837 CEP164Q9UPV0 1460 aa6.37□□□□□ -1.39
VPS13C-201ENST00000249837 SUPT16HQ9Y5B9 1047 aaKnown RBP6.37□□□□□ -1.39
VPS13C-201ENST00000249837 RUSC2Q8N2Y8 1516 aa6.36□□□□□ -1.39
VPS13C-201ENST00000249837 SLC4A1APQ9BWU0 796 aaKnown RBP6.35□□□□□ -1.39
VPS13C-201ENST00000249837 KANK4Q5T7N3 995 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-201ENST00000249837 ZNF777Q9ULD5 760 aaPredicted RBP6.34□□□□□ -1.39
VPS13C-201ENST00000249837 RRP7BPQ9NSQ0 103 aa6.34□□□□□ -1.4
VPS13C-201ENST00000249837 SALL2Q9Y467 1007 aaPredicted RBP6.33□□□□□ -1.4
VPS13C-201ENST00000249837 VPS8Q8N3P4 1428 aa6.33□□□□□ -1.4
VPS13C-201ENST00000249837 FBLN2P98095 1184 aa6.32□□□□□ -1.4
VPS13C-201ENST00000249837 BAZ1BQ9UIG0 1483 aaKnown RBP6.32□□□□□ -1.4
VPS13C-201ENST00000249837 ANP32EQ9BTT0 268 aa6.31□□□□□ -1.4
VPS13C-201ENST00000249837 MRS2Q9HD23 443 aa6.31□□□□□ -1.4
VPS13C-201ENST00000249837 CCNB3Q8WWL7 1395 aa6.3□□□□□ -1.4
VPS13C-201ENST00000249837 NBR1Q14596 966 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms