Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AC017083.2-201ENST00000608069 979 ntBASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AL645728.2-201ENST00000641974 660 ntBASIC11.85□□□□□ -0.51
CSMD3Q7Z407 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AP000974.1-201ENST00000623909 2387 ntBASIC11.85□□□□□ -0.51
CSMD3Q7Z407 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 AP3S2-216ENST00000617003 1561 ntBASIC11.85□□□□□ -0.51
CSMD3Q7Z407 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CSMD3Q7Z407 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 REEP4-207ENST00000523293 913 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC027369.6-201ENST00000525520 931 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC140912.1-201ENST00000577171 1054 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 SNX29P1-201ENST00000548357 1007 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC084346.2-201ENST00000607097 949 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC106820.2-201ENST00000563775 3264 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC046185.3-201ENST00000623228 1824 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AL513480.1-201ENST00000451731 511 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 SATB1-217ENST00000493952 626 ntTSL 3 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AL138918.1-201ENST00000568306 659 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 MIR6787-201ENST00000616675 61 ntBASIC11.84□□□□□ -0.51
CSMD3Q7Z407 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CSMD3Q7Z407 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
CSMD3Q7Z407 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HMGA1P7-201ENST00000406908 502 ntBASIC11.83□□□□□ -0.52
CSMD3Q7Z407 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 AC012317.2-201ENST00000623305 2251 ntBASIC11.83□□□□□ -0.52
CSMD3Q7Z407 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms