Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CDH6P55285 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CDH6P55285 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.95■□□□□ 0.46
CDH6P55285 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.95■□□□□ 0.46
CDH6P55285 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.95■□□□□ 0.46
CDH6P55285 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.95■□□□□ 0.46
CDH6P55285 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
CDH6P55285 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.95■□□□□ 0.46
CDH6P55285 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.95■□□□□ 0.46
CDH6P55285 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CDH6P55285 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.95■□□□□ 0.46
CDH6P55285 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.95■□□□□ 0.46
CDH6P55285 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.95■□□□□ 0.46
CDH6P55285 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CDH6P55285 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.95■□□□□ 0.46
CDH6P55285 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDH6P55285 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 NKILA-202ENST00000614771 2598 ntBASIC17.94■□□□□ 0.46
CDH6P55285 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.94■□□□□ 0.46
CDH6P55285 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.94■□□□□ 0.46
CDH6P55285 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.94■□□□□ 0.46
CDH6P55285 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CDH6P55285 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.94■□□□□ 0.46
CDH6P55285 AC132008.2-207ENST00000454517 770 ntBASIC17.94■□□□□ 0.46
CDH6P55285 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.94■□□□□ 0.46
CDH6P55285 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.94■□□□□ 0.46
CDH6P55285 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CDH6P55285 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDH6P55285 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.94■□□□□ 0.46
CDH6P55285 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CDH6P55285 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDH6P55285 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDH6P55285 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CDH6P55285 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CDH6P55285 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDH6P55285 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CDH6P55285 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CDH6P55285 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 AC011676.5-201ENST00000624864 2660 ntBASIC17.93■□□□□ 0.46
CDH6P55285 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.93■□□□□ 0.46
CDH6P55285 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CDH6P55285 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.93■□□□□ 0.46
CDH6P55285 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.93■□□□□ 0.46
CDH6P55285 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.93■□□□□ 0.46
CDH6P55285 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.93■□□□□ 0.46
CDH6P55285 AP001269.4-201ENST00000609611 512 ntBASIC17.93■□□□□ 0.46
CDH6P55285 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.93■□□□□ 0.46
CDH6P55285 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CDH6P55285 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDH6P55285 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CDH6P55285 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDH6P55285 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms