Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.66■□□□□ 0.9
BRCA1P38398 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.66■□□□□ 0.9
BRCA1P38398 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.66■□□□□ 0.9
BRCA1P38398 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.66■□□□□ 0.9
BRCA1P38398 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.66■□□□□ 0.9
BRCA1P38398 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRCA1P38398 REXO1L6P-201ENST00000603433 1515 ntBASIC20.65■□□□□ 0.9
BRCA1P38398 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 AL023806.1-201ENST00000603994 1649 ntBASIC20.65■□□□□ 0.9
BRCA1P38398 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.65■□□□□ 0.9
BRCA1P38398 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.65■□□□□ 0.9
BRCA1P38398 USP32P1-208ENST00000506594 1164 ntBASIC20.65■□□□□ 0.9
BRCA1P38398 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
BRCA1P38398 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCA1P38398 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.65■□□□□ 0.9
BRCA1P38398 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.65■□□□□ 0.9
BRCA1P38398 SPDYE19P-201ENST00000338590 713 ntBASIC20.64■□□□□ 0.9
BRCA1P38398 LYSMD4-203ENST00000378904 2122 ntBASIC20.64■□□□□ 0.9
BRCA1P38398 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
BRCA1P38398 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.64■□□□□ 0.9
BRCA1P38398 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.64■□□□□ 0.9
BRCA1P38398 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRCA1P38398 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
BRCA1P38398 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
BRCA1P38398 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
BRCA1P38398 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
BRCA1P38398 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.64■□□□□ 0.89
BRCA1P38398 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.64■□□□□ 0.89
BRCA1P38398 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 GNAQP1-201ENST00000444815 1067 ntBASIC20.64■□□□□ 0.89
BRCA1P38398 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.64■□□□□ 0.89
BRCA1P38398 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.64■□□□□ 0.89
BRCA1P38398 MIR4492-201ENST00000581627 80 ntBASIC20.64■□□□□ 0.89
BRCA1P38398 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCA1P38398 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.64■□□□□ 0.89
BRCA1P38398 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.64■□□□□ 0.89
BRCA1P38398 COX11-210ENST00000639671 696 ntBASIC20.64■□□□□ 0.89
BRCA1P38398 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCA1P38398 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCA1P38398 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCA1P38398 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCA1P38398 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.63■□□□□ 0.89
BRCA1P38398 AL079307.3-201ENST00000556114 283 ntBASIC20.63■□□□□ 0.89
BRCA1P38398 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 RN7SL828P-201ENST00000607615 303 ntBASIC20.63■□□□□ 0.89
BRCA1P38398 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCA1P38398 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
BRCA1P38398 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
BRCA1P38398 REXO1L9P-201ENST00000604264 2108 ntBASIC20.63■□□□□ 0.89
BRCA1P38398 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCA1P38398 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCA1P38398 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCA1P38398 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.62■□□□□ 0.89
BRCA1P38398 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.62■□□□□ 0.89
BRCA1P38398 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.62■□□□□ 0.89
BRCA1P38398 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCA1P38398 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCA1P38398 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCA1P38398 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCA1P38398 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms