Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC10.6□□□□□ -0.71
APOBP04114 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC10.6□□□□□ -0.71
APOBP04114 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
APOBP04114 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
APOBP04114 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
APOBP04114 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
APOBP04114 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC10.6□□□□□ -0.71
APOBP04114 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
APOBP04114 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
APOBP04114 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC10.6□□□□□ -0.71
APOBP04114 ALG1L8P-201ENST00000533887 760 ntBASIC10.6□□□□□ -0.71
APOBP04114 RAB35-202ENST00000534951 939 ntTSL 2 BASIC10.6□□□□□ -0.71
APOBP04114 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
APOBP04114 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 AC012569.1-201ENST00000591191 1524 ntBASIC10.59□□□□□ -0.71
APOBP04114 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC10.59□□□□□ -0.71
APOBP04114 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 STK4-201ENST00000372801 2038 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC10.59□□□□□ -0.71
APOBP04114 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC10.59□□□□□ -0.71
APOBP04114 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC10.59□□□□□ -0.71
APOBP04114 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC10.59□□□□□ -0.71
APOBP04114 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC10.59□□□□□ -0.71
APOBP04114 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 REXO1L6P-201ENST00000603433 1515 ntBASIC10.59□□□□□ -0.71
APOBP04114 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC10.59□□□□□ -0.71
APOBP04114 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 AC092552.1-201ENST00000547243 906 ntBASIC10.59□□□□□ -0.71
APOBP04114 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 MPI-209ENST00000564003 1195 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC10.59□□□□□ -0.71
APOBP04114 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
APOBP04114 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 PRR29-204ENST00000577953 565 ntTSL 4 BASIC10.58□□□□□ -0.72
APOBP04114 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 MTRF1LP2-201ENST00000506027 1122 ntBASIC10.58□□□□□ -0.72
APOBP04114 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC10.58□□□□□ -0.72
APOBP04114 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 RPF1-202ENST00000370656 724 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms