Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 KRASP1-201ENST00000407852 552 ntBASIC13.02□□□□□ -0.33
HLA-DQA1P01909 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 AC233263.1-201ENST00000578059 224 ntBASIC13.02□□□□□ -0.33
HLA-DQA1P01909 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 AL023875.1-201ENST00000640777 796 ntBASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 NBPF21P-201ENST00000425093 1451 ntBASIC13.02□□□□□ -0.33
HLA-DQA1P01909 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
HLA-DQA1P01909 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 AC073648.6-201ENST00000641589 218 ntBASIC13.01□□□□□ -0.33
HLA-DQA1P01909 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 LINC01311-201ENST00000565162 1445 ntBASIC13.01□□□□□ -0.33
HLA-DQA1P01909 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 LINC02228-204ENST00000642115 2962 ntBASIC13.01□□□□□ -0.33
HLA-DQA1P01909 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.01□□□□□ -0.33
HLA-DQA1P01909 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms