Protein–RNA interactions for Protein: Q8NET4

RTL9, Retrotransposon Gag-like protein 9, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL9Q8NET4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL9Q8NET4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.14■□□□□ 0.97
RTL9Q8NET4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 AC002056.1-201ENST00000395613 760 ntBASIC21.13■□□□□ 0.97
RTL9Q8NET4 AC004461.1-201ENST00000412461 403 ntBASIC21.13■□□□□ 0.97
RTL9Q8NET4 AL355306.1-201ENST00000415580 579 ntBASIC21.13■□□□□ 0.97
RTL9Q8NET4 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 MIR4515-201ENST00000584082 81 ntBASIC21.13■□□□□ 0.97
RTL9Q8NET4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RTL9Q8NET4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL9Q8NET4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 DUX4L17-201ENST00000557360 1267 ntBASIC21.12■□□□□ 0.97
RTL9Q8NET4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 AC020763.4-201ENST00000623414 4170 ntBASIC21.12■□□□□ 0.97
RTL9Q8NET4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.12■□□□□ 0.97
RTL9Q8NET4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL9Q8NET4 AC016396.2-201ENST00000562575 1417 ntBASIC21.12■□□□□ 0.97
RTL9Q8NET4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RTL9Q8NET4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
RTL9Q8NET4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 AC011467.4-201ENST00000594891 528 ntBASIC21.1■□□□□ 0.97
RTL9Q8NET4 AC004835.2-201ENST00000603762 682 ntBASIC21.1■□□□□ 0.97
RTL9Q8NET4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 AL138688.1-201ENST00000624851 1594 ntBASIC21.1■□□□□ 0.97
RTL9Q8NET4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RTL9Q8NET4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.1■□□□□ 0.97
RTL9Q8NET4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms