Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC096734.2-201ENST00000562054 433 ntBASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC004877.2-201ENST00000623941 599 ntBASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC010507.1-201ENST00000633895 436 ntBASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 AC244107.1-201ENST00000442033 332 ntBASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 OR6D1P-202ENST00000641007 5290 ntBASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDDC3Q8N4P3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 BCAR1-209ENST00000546196 1340 ntBASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 SLC25A6P5-201ENST00000435663 894 ntBASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 LYSMD4-203ENST00000378904 2122 ntBASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HDDC3Q8N4P3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms