Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.8■□□□□ 0.28
NDE1Q9NXR1 NUDT16P1-203ENST00000513809 620 ntBASIC16.8■□□□□ 0.28
NDE1Q9NXR1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 AL023803.3-201ENST00000615559 522 ntBASIC16.8■□□□□ 0.28
NDE1Q9NXR1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NDE1Q9NXR1 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AL662844.4-201ENST00000606367 2838 ntBASIC16.79■□□□□ 0.28
NDE1Q9NXR1 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AC093525.9-201ENST00000624961 1746 ntBASIC16.79■□□□□ 0.28
NDE1Q9NXR1 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 C1QBPP2-201ENST00000528754 825 ntBASIC16.79■□□□□ 0.28
NDE1Q9NXR1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AP005242.2-201ENST00000580065 1175 ntBASIC16.79■□□□□ 0.28
NDE1Q9NXR1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AC073648.6-201ENST00000641589 218 ntBASIC16.79■□□□□ 0.28
NDE1Q9NXR1 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.79■□□□□ 0.28
NDE1Q9NXR1 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 AC124947.2-201ENST00000547118 1133 ntBASIC16.78■□□□□ 0.28
NDE1Q9NXR1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 RNF216P1-203ENST00000404404 2427 ntBASIC16.78■□□□□ 0.28
NDE1Q9NXR1 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
NDE1Q9NXR1 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms