Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SRSF3-207ENST00000620389 2655 ntTSL 28.22□□□□□ -1.091e-12■□□□□ 10.1
UPF1Q92900 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.221e-12■□□□□ 10.1
UPF1Q92900 SRSF3-205ENST00000614136 2376 nt6.55□□□□□ -1.361e-12■□□□□ 10.1
UPF1Q92900 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.295e-7■□□□□ 10.1
UPF1Q92900 SLC20A1-207ENST00000490674 3202 ntTSL 1 (best)8.59□□□□□ -1.035e-7■□□□□ 10.1
UPF1Q92900 MARCH8-206ENST00000476962 2155 ntTSL 213.69□□□□□ -0.222e-6■□□□□ 10.1
UPF1Q92900 MARCH8-202ENST00000395769 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.352e-6■□□□□ 10.1
UPF1Q92900 ARL8B-205ENST00000455168 1641 ntTSL 219.76■□□□□ 0.752e-7■□□□□ 10.1
UPF1Q92900 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.543e-7■□□□□ 10.1
UPF1Q92900 CTDSP1-213ENST00000496785 460 ntTSL 526.3■■□□□ 1.83e-7■□□□□ 10.1
UPF1Q92900 NEDD8-MDP1-204ENST00000605847 758 ntTSL 524.28■■□□□ 1.483e-7■□□□□ 10.1
UPF1Q92900 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.04■□□□□ 0.968e-10■□□□□ 10.1
UPF1Q92900 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.743e-7■□□□□ 10.1
UPF1Q92900 NEDD8-208ENST00000560427 654 ntTSL 217.54■□□□□ 0.43e-7■□□□□ 10.1
UPF1Q92900 NEDD8-204ENST00000526430 286 ntTSL 317.49■□□□□ 0.393e-7■□□□□ 10.1
UPF1Q92900 AGXT-202ENST00000470255 2638 ntTSL 217.11■□□□□ 0.333e-7■□□□□ 10.1
UPF1Q92900 NEDD8-MDP1-202ENST00000534348 595 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.293e-7■□□□□ 10.1
UPF1Q92900 NEDD8-202ENST00000396828 626 ntTSL 215.43■□□□□ 0.063e-7■□□□□ 10.1
UPF1Q92900 NEDD8-MDP1-203ENST00000604306 681 ntTSL 514.56□□□□□ -0.083e-7■□□□□ 10.1
UPF1Q92900 DNM2-213ENST00000589106 565 ntTSL 214.44□□□□□ -0.13e-7■□□□□ 10.1
UPF1Q92900 NEDD8-205ENST00000527046 847 ntTSL 214.31□□□□□ -0.123e-7■□□□□ 10.1
UPF1Q92900 NEDD8-206ENST00000531430 651 ntTSL 214.24□□□□□ -0.133e-7■□□□□ 10.1
UPF1Q92900 NEDD8-MDP1-201ENST00000530579 471 ntTSL 210.68□□□□□ -0.73e-7■□□□□ 10.1
UPF1Q92900 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.13e-7■□□□□ 10.1
UPF1Q92900 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.543e-7■□□□□ 10.1
UPF1Q92900 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC29.06■■■□□ 2.243e-7■□□□□ 10.1
UPF1Q92900 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC24.75■■□□□ 1.553e-7■□□□□ 10.1
UPF1Q92900 SEC22C-209ENST00000449617 1446 ntTSL 218.78■□□□□ 0.63e-7■□□□□ 10.1
UPF1Q92900 SEC22C-205ENST00000417572 1513 ntTSL 3 BASIC16.75■□□□□ 0.273e-7■□□□□ 10.1
UPF1Q92900 SEC22C-211ENST00000451653 5955 ntTSL 1 (best)8.14□□□□□ -1.113e-7■□□□□ 10.1
UPF1Q92900 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.063e-18■□□□□ 10.1
UPF1Q92900 CAPRIN1-215ENST00000533657 2774 ntTSL 212.96□□□□□ -0.343e-18■□□□□ 10.1
UPF1Q92900 CAPRIN1-201ENST00000341394 4108 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.533e-18■□□□□ 10.1
UPF1Q92900 TTL-201ENST00000233336 14269 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.832e-8■□□□□ 10
UPF1Q92900 TTL-202ENST00000460450 4148 ntTSL 28.67□□□□□ -1.022e-8■□□□□ 10
UPF1Q92900 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.962e-6■□□□□ 10
UPF1Q92900 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.672e-6■□□□□ 10
UPF1Q92900 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.342e-8■□□□□ 10
UPF1Q92900 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC10.72□□□□□ -0.694e-10■□□□□ 10
UPF1Q92900 ORAOV1-204ENST00000535542 951 ntTSL 330.6■■■□□ 2.493e-7■□□□□ 10
UPF1Q92900 RNF44-207ENST00000513029 1647 ntTSL 222.76■■□□□ 1.233e-7■□□□□ 10
UPF1Q92900 RNF44-205ENST00000508478 662 ntTSL 321.41■■□□□ 1.023e-7■□□□□ 10
UPF1Q92900 RNF44-208ENST00000515051 596 ntTSL 418.65■□□□□ 0.583e-7■□□□□ 10
UPF1Q92900 PDPK1-214ENST00000561962 570 ntTSL 416.07■□□□□ 0.163e-7■□□□□ 10
UPF1Q92900 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.94□□□□□ -1.142e-6■□□□□ 10
UPF1Q92900 MT-TG-201ENST00000387429 68 ntBASIC8.99□□□□□ -0.977e-10■□□□□ 10
UPF1Q92900 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.533e-13■□□□□ 10
UPF1Q92900 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.863e-13■□□□□ 10
UPF1Q92900 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.18■□□□□ 0.663e-13■□□□□ 10
UPF1Q92900 SSBP3-212ENST00000528930 862 ntTSL 1 (best)14.34□□□□□ -0.113e-13■□□□□ 10
UPF1Q92900 SSBP3-215ENST00000533946 431 ntTSL 313.92□□□□□ -0.183e-13■□□□□ 10
UPF1Q92900 CSNK1D-201ENST00000269361 1088 ntTSL 525.73■■□□□ 1.713e-6■□□□□ 10
UPF1Q92900 CSNK1D-205ENST00000403276 1040 ntTSL 223.9■■□□□ 1.423e-6■□□□□ 10
UPF1Q92900 CDC27-201ENST00000066544 5801 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.13e-6■□□□□ 10
UPF1Q92900 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC14.75□□□□□ -0.051e-7■□□□□ 10
UPF1Q92900 CDYL-202ENST00000343762 3241 ntTSL 1 (best) BASIC11.13□□□□□ -0.636e-8■□□□□ 10
UPF1Q92900 CDYL-201ENST00000328908 3419 ntTSL 1 (best) BASIC10.1□□□□□ -0.796e-8■□□□□ 10
UPF1Q92900 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.382e-8■□□□□ 10
UPF1Q92900 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.4■□□□□ 0.382e-8■□□□□ 10
UPF1Q92900 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.32e-8■□□□□ 10
UPF1Q92900 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.082e-12■□□□□ 10
UPF1Q92900 FKBP1A-206ENST00000460490 694 ntTSL 214.04□□□□□ -0.162e-7■□□□□ 10
UPF1Q92900 MTPN-202ENST00000435723 879 ntTSL 1 (best) BASIC13.63□□□□□ -0.239e-18■□□□□ 10
UPF1Q92900 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC12.49□□□□□ -0.412e-7■□□□□ 10
UPF1Q92900 CD164-206ENST00000499860 2845 ntTSL 1 (best)4.3□□□□□ -1.722e-10■□□□□ 10
UPF1Q92900 VTI1B-201ENST00000216456 1103 ntTSL 1 (best)32.39■■■□□ 2.781e-7■□□□□ 10
UPF1Q92900 Z98883.1-201ENST00000409439 916 ntTSL 331.62■■■□□ 2.657e-6■□□□□ 10
UPF1Q92900 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.28■■■□□ 2.447e-6■□□□□ 10
UPF1Q92900 FBXW2-201ENST00000453291 1079 ntTSL 529.72■■■□□ 2.357e-9■□□□□ 10
UPF1Q92900 PIGQ-202ENST00000293874 603 ntTSL 427.75■■■□□ 2.037e-6■□□□□ 10
UPF1Q92900 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.857e-6■□□□□ 10
UPF1Q92900 ULK3-214ENST00000567472 841 ntTSL 326.48■■□□□ 1.837e-6■□□□□ 10
UPF1Q92900 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.717e-6■□□□□ 10
UPF1Q92900 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.437e-6■□□□□ 10
UPF1Q92900 KEL-206ENST00000476829 649 ntTSL 322.47■■□□□ 1.197e-6■□□□□ 10
UPF1Q92900 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.077e-6■□□□□ 10
UPF1Q92900 NCOR2-210ENST00000440337 956 ntTSL 321.52■■□□□ 1.047e-6■□□□□ 10
UPF1Q92900 NCOR2-211ENST00000443451 951 ntTSL 521.35■■□□□ 1.017e-6■□□□□ 10
UPF1Q92900 NCOR2-206ENST00000418829 563 ntTSL 320.08■□□□□ 0.817e-6■□□□□ 10
UPF1Q92900 CASTOR2-202ENST00000622472 809 ntTSL 219.89■□□□□ 0.777e-6■□□□□ 10
UPF1Q92900 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19■□□□□ 0.637e-6■□□□□ 10
UPF1Q92900 KEL-209ENST00000494148 417 ntTSL 316.22■□□□□ 0.197e-6■□□□□ 10
UPF1Q92900 ELP3-215ENST00000523357 874 ntTSL 316.08■□□□□ 0.167e-6■□□□□ 10
UPF1Q92900 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC16.03■□□□□ 0.167e-6■□□□□ 10
UPF1Q92900 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.137e-6■□□□□ 10
UPF1Q92900 KEL-208ENST00000479768 1856 ntTSL 515.44■□□□□ 0.067e-6■□□□□ 10
UPF1Q92900 URM1-201ENST00000372847 753 ntTSL 3 BASIC15.12■□□□□ 0.017e-6■□□□□ 10
UPF1Q92900 FOXD2-AS1-201ENST00000445551 2509 ntBASIC14.8□□□□□ -0.047e-6■□□□□ 10
UPF1Q92900 ZNF384-203ENST00000361959 2978 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.077e-6■□□□□ 10
UPF1Q92900 BAG1-204ENST00000467389 1173 ntTSL 514.07□□□□□ -0.167e-6■□□□□ 10
UPF1Q92900 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC14.07□□□□□ -0.167e-6■□□□□ 10
UPF1Q92900 GTSE1-201ENST00000454366 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.387e-9■□□□□ 10
UPF1Q92900 KEL-201ENST00000355265 2812 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.547e-6■□□□□ 10
UPF1Q92900 BAG1-205ENST00000468274 935 ntTSL 311.63□□□□□ -0.557e-6■□□□□ 10
UPF1Q92900 VTI1B-206ENST00000556461 576 ntTSL 211.49□□□□□ -0.571e-7■□□□□ 10
UPF1Q92900 BAG1-201ENST00000379701 1977 ntTSL 211.3□□□□□ -0.67e-6■□□□□ 10
UPF1Q92900 RAD54B-205ENST00000518998 599 ntTSL 310.45□□□□□ -0.747e-9■□□□□ 10
UPF1Q92900 RAD54B-203ENST00000463267 1699 ntTSL 1 (best)10.04□□□□□ -0.87e-9■□□□□ 10
UPF1Q92900 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.837e-9■□□□□ 10
UPF1Q92900 VTI1B-203ENST00000554636 565 ntTSL 38.85□□□□□ -0.991e-7■□□□□ 10
Retrieved 100 of 15,879 protein–RNA pairs in 70.7 ms