RNA–Protein interactions for RNA: ENST00000066544.7

CDC27-201, Transcript of cell division cycle 27, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDC27, Length 5,801 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC27-201ENST00000066544 NISCHQ9Y2I1 1504 aa16.76■□□□□ 0.27
CDC27-201ENST00000066544 SHROOM4Q9ULL8 1493 aa14.77□□□□□ -0.05
CDC27-201ENST00000066544 SUPT5HO00267 1087 aaKnown RBP14.52□□□□□ -0.08
CDC27-201ENST00000066544 DCAF8L2P0C7V8 631 aa14.45□□□□□ -0.1
CDC27-201ENST00000066544 ZCCHC6Q5VYS8 1495 aaKnown RBP14.14□□□□□ -0.15
CDC27-201ENST00000066544 CCDC180Q9P1Z9 1646 aa14.02□□□□□ -0.16
CDC27-201ENST00000066544 CHIC1Q5VXU3 224 aa13.95□□□□□ -0.18
CDC27-201ENST00000066544 MYO15BQ96JP2 1530 aa13.85□□□□□ -0.19
CDC27-201ENST00000066544 PCGF6Q9BYE7 350 aa13.72□□□□□ -0.21
CDC27-201ENST00000066544 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
CDC27-201ENST00000066544 HRCP23327 699 aa13.57□□□□□ -0.24
CDC27-201ENST00000066544 DCAF1Q9Y4B6 1507 aa13.55□□□□□ -0.24
CDC27-201ENST00000066544 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
CDC27-201ENST00000066544 FAM9AQ8IZU1 332 aaPredicted RBP13.49□□□□□ -0.25
CDC27-201ENST00000066544 PPARGC1BQ86YN6 1023 aaKnown RBP13.49□□□□□ -0.25
CDC27-201ENST00000066544 SCRIBQ14160 1630 aa13.47□□□□□ -0.25
CDC27-201ENST00000066544 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
CDC27-201ENST00000066544 ABCC9O60706 1549 aa13.4□□□□□ -0.26
CDC27-201ENST00000066544 RSF1Q96T23 1441 aaPredicted RBP13.37□□□□□ -0.27
CDC27-201ENST00000066544 TRIM26Q12899 539 aaPredicted RBP13.26□□□□□ -0.29
CDC27-201ENST00000066544 RB1CC1Q8TDY2 1594 aa13.24□□□□□ -0.29
CDC27-201ENST00000066544 CECR2Q9BXF3 1484 aa13.23□□□□□ -0.29
CDC27-201ENST00000066544 MROH2BQ7Z745 1585 aa13.12□□□□□ -0.31
CDC27-201ENST00000066544 TTBK1Q5TCY1 1321 aaPredicted RBP13.07□□□□□ -0.32
CDC27-201ENST00000066544 NACADO15069 1562 aa13.06□□□□□ -0.32
CDC27-201ENST00000066544 WIZO95785 1651 aa13.03□□□□□ -0.32
CDC27-201ENST00000066544 PABPN1Q86U42 306 aaKnown RBP eCLIP12.96□□□□□ -0.33
CDC27-201ENST00000066544 ZEB1P37275 1124 aaPredicted RBP12.92□□□□□ -0.34
CDC27-201ENST00000066544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.91□□□□□ -0.34
CDC27-201ENST00000066544 ABCC8Q09428 1581 aa12.85□□□□□ -0.35
CDC27-201ENST00000066544 BAZ1AQ9NRL2 1556 aaPredicted RBP12.85□□□□□ -0.35
CDC27-201ENST00000066544 CCER1Q8TC90 406 aaPredicted RBP12.84□□□□□ -0.35
CDC27-201ENST00000066544 UBTFP17480 764 aaKnown RBP12.83□□□□□ -0.36
CDC27-201ENST00000066544 CCDC88BA6NC98 1476 aa12.81□□□□□ -0.36
CDC27-201ENST00000066544 SOGA1O94964 1423 aa12.77□□□□□ -0.36
CDC27-201ENST00000066544 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.37
CDC27-201ENST00000066544 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
CDC27-201ENST00000066544 CSRNP3Q8WYN3 585 aa12.73□□□□□ -0.37
CDC27-201ENST00000066544 TOP2AP11388 1531 aaKnown RBP12.73□□□□□ -0.37
CDC27-201ENST00000066544 RUSC2Q8N2Y8 1516 aa12.71□□□□□ -0.37
CDC27-201ENST00000066544 SMARCA2P51531 1590 aa12.69□□□□□ -0.38
CDC27-201ENST00000066544 CEP162Q5TB80 1403 aa12.69□□□□□ -0.38
CDC27-201ENST00000066544 EIF4G1Q04637 1599 aaKnown RBP12.68□□□□□ -0.38
CDC27-201ENST00000066544 UNC13AQ9UPW8 1703 aa12.63□□□□□ -0.39
CDC27-201ENST00000066544 HNRNPUL2Q1KMD3 747 aaKnown RBP12.62□□□□□ -0.39
CDC27-201ENST00000066544 TNIKQ9UKE5 1360 aa12.6□□□□□ -0.39
CDC27-201ENST00000066544 SCAF1Q9H7N4 1312 aaKnown RBP12.6□□□□□ -0.39
CDC27-201ENST00000066544 WRNQ14191 1432 aaPredicted RBP eCLIP12.59□□□□□ -0.39
CDC27-201ENST00000066544 DIEXFQ68CQ4 756 aaKnown RBP12.55□□□□□ -0.4
CDC27-201ENST00000066544 BICRAQ9NZM4 1560 aa12.54□□□□□ -0.4
CDC27-201ENST00000066544 APLP2Q06481 763 aa12.52□□□□□ -0.4
CDC27-201ENST00000066544 GOLGA3Q08378 1498 aa12.52□□□□□ -0.41
CDC27-201ENST00000066544 EEA1Q15075 1411 aa12.51□□□□□ -0.41
CDC27-201ENST00000066544 NEUROD1Q13562 356 aa12.48□□□□□ -0.41
CDC27-201ENST00000066544 BAZ1BQ9UIG0 1483 aaKnown RBP12.48□□□□□ -0.41
CDC27-201ENST00000066544 ATAD2BQ9ULI0 1458 aa12.47□□□□□ -0.41
CDC27-201ENST00000066544 CLIP1P30622 1438 aa12.47□□□□□ -0.41
CDC27-201ENST00000066544 SYNJ1O43426 1573 aa12.46□□□□□ -0.41
CDC27-201ENST00000066544 YTHDC1Q96MU7 727 aaKnown RBP12.45□□□□□ -0.42
CDC27-201ENST00000066544 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
CDC27-201ENST00000066544 ACIN1Q9UKV3 1341 aaKnown RBP12.42□□□□□ -0.42
CDC27-201ENST00000066544 RAPGEF2Q9Y4G8 1499 aa12.42□□□□□ -0.42
CDC27-201ENST00000066544 ZNF316A6NFI3 1004 aaPredicted RBP12.39□□□□□ -0.43
CDC27-201ENST00000066544 GTF3C3Q9Y5Q9 886 aa12.37□□□□□ -0.43
CDC27-201ENST00000066544 CENPBP07199 599 aaPredicted RBP12.36□□□□□ -0.43
CDC27-201ENST00000066544 ITGAEP38570 1179 aa12.35□□□□□ -0.43
CDC27-201ENST00000066544 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
CDC27-201ENST00000066544 VPS8Q8N3P4 1428 aa12.34□□□□□ -0.43
CDC27-201ENST00000066544 KANK4Q5T7N3 995 aaPredicted RBP12.3□□□□□ -0.44
CDC27-201ENST00000066544 MIER1Q8N108 512 aa12.3□□□□□ -0.44
CDC27-201ENST00000066544 KIF21BO75037 1637 aa12.29□□□□□ -0.44
CDC27-201ENST00000066544 ATP1B4Q9UN42 357 aaPredicted RBP12.24□□□□□ -0.45
CDC27-201ENST00000066544 TOP2BQ02880 1626 aa12.21□□□□□ -0.45
CDC27-201ENST00000066544 P3H3Q8IVL6 736 aa12.21□□□□□ -0.46
CDC27-201ENST00000066544 PELP1Q8IZL8 1130 aaKnown RBP12.19□□□□□ -0.46
CDC27-201ENST00000066544 KIF27Q86VH2 1401 aa12.19□□□□□ -0.46
CDC27-201ENST00000066544 CUX1P39880 1505 aa12.18□□□□□ -0.46
CDC27-201ENST00000066544 ARAP1Q96P48 1450 aa12.18□□□□□ -0.46
CDC27-201ENST00000066544 PRXQ9BXM0 1461 aa12.17□□□□□ -0.46
CDC27-201ENST00000066544 NCAPD3P42695 1498 aa12.15□□□□□ -0.46
CDC27-201ENST00000066544 DHX57Q6P158 1386 aaKnown RBP12.13□□□□□ -0.47
CDC27-201ENST00000066544 CUX2O14529 1486 aa12.12□□□□□ -0.47
CDC27-201ENST00000066544 FAM50AQ14320 339 aaKnown RBP12.11□□□□□ -0.47
CDC27-201ENST00000066544 BIVM-ERCC5R4GMW8 1640 aa12.1□□□□□ -0.47
CDC27-201ENST00000066544 CFTRP13569 1480 aa12.09□□□□□ -0.47
CDC27-201ENST00000066544 ERICH3Q5RHP9 1530 aa12.09□□□□□ -0.47
CDC27-201ENST00000066544 ARHGAP35Q9NRY4 1499 aa12.08□□□□□ -0.48
CDC27-201ENST00000066544 CCNB3Q8WWL7 1395 aa12.07□□□□□ -0.48
CDC27-201ENST00000066544 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
CDC27-201ENST00000066544 IGF1RP08069 1367 aa12.07□□□□□ -0.48
CDC27-201ENST00000066544 CARMIL1Q5VZK9 1371 aa12.05□□□□□ -0.48
CDC27-201ENST00000066544 CADPSQ9ULU8 1353 aa12.03□□□□□ -0.48
CDC27-201ENST00000066544 SIN3AQ96ST3 1273 aa12.01□□□□□ -0.49
CDC27-201ENST00000066544 FGD5Q6ZNL6 1462 aa12.01□□□□□ -0.49
CDC27-201ENST00000066544 RAB3GAP2Q9H2M9 1393 aa12□□□□□ -0.49
CDC27-201ENST00000066544 HIRIP3Q9BW71 556 aaPredicted RBP12□□□□□ -0.49
CDC27-201ENST00000066544 RRBP1Q9P2E9 1410 aaKnown RBP12□□□□□ -0.49
CDC27-201ENST00000066544 CLSPNQ9HAW4 1339 aa12□□□□□ -0.49
CDC27-201ENST00000066544 KCNH8Q96L42 1107 aa11.97□□□□□ -0.49
CDC27-201ENST00000066544 RAD54L2Q9Y4B4 1467 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms