Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 OR7E14P-202ENST00000530490 1290 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PHGDH-209ENST00000641074 1780 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CD9-202ENST00000382515 1229 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LAGE3P1-201ENST00000425356 484 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC009947.1-201ENST00000444350 727 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MTCL1P1-201ENST00000446207 792 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC112482.1-201ENST00000492080 688 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AL078644.1-201ENST00000609881 752 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 USP39-202ENST00000409025 1946 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 YBX2P1-201ENST00000394192 760 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 UPF3AP3-201ENST00000420996 769 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC112698.1-201ENST00000510299 916 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RNF151-202ENST00000569210 853 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC132938.5-201ENST00000624980 1813 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CAND2-206ENST00000626378 333 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CROCCP3-202ENST00000420820 1947 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CNN2P11-201ENST00000429351 262 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC108751.1-201ENST00000490852 363 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 POLD4-207ENST00000531239 584 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms