Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 AC008735.5-201ENST00000623544 497 ntBASIC17.72■□□□□ 0.43
RTL3Q8N8U3 FAM215A-202ENST00000632077 792 ntBASIC17.72■□□□□ 0.43
RTL3Q8N8U3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.71■□□□□ 0.43
RTL3Q8N8U3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 RPS2P28-201ENST00000314255 741 ntBASIC17.71■□□□□ 0.43
RTL3Q8N8U3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 AL031284.1-201ENST00000419297 478 ntBASIC17.71■□□□□ 0.43
RTL3Q8N8U3 KRT18P27-201ENST00000427733 1299 ntBASIC17.71■□□□□ 0.43
RTL3Q8N8U3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 AL662844.1-201ENST00000546340 181 ntBASIC17.71■□□□□ 0.43
RTL3Q8N8U3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RTL3Q8N8U3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.71■□□□□ 0.42
RTL3Q8N8U3 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
RTL3Q8N8U3 AL590787.1-201ENST00000568856 1315 ntBASIC17.71■□□□□ 0.42
RTL3Q8N8U3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 LINC02012-201ENST00000608206 1725 ntBASIC17.7■□□□□ 0.42
RTL3Q8N8U3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 ELK2BP-201ENST00000415014 1224 ntBASIC17.7■□□□□ 0.42
RTL3Q8N8U3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 RNA5SP419-201ENST00000515908 135 ntBASIC17.7■□□□□ 0.42
RTL3Q8N8U3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.7■□□□□ 0.42
RTL3Q8N8U3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTL3Q8N8U3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RTL3Q8N8U3 GPR89P-201ENST00000407924 1495 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms