Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNFT1Q5M7Z0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 SLC25A6P5-201ENST00000435663 894 ntBASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 AL513480.1-201ENST00000451731 511 ntBASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.51■□□□□ 0.07
RNFT1Q5M7Z0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AC133963.1-201ENST00000504166 1679 ntBASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AL390961.4-201ENST00000623958 2535 ntBASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNFT1Q5M7Z0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 BCL2-203ENST00000589955 5011 ntBASIC15.49■□□□□ 0.07
RNFT1Q5M7Z0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms