Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.43■□□□□ 0.22
UPK1AO00322 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.43■□□□□ 0.22
UPK1AO00322 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
UPK1AO00322 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 ATP5G2P1-201ENST00000433580 426 ntBASIC16.42■□□□□ 0.22
UPK1AO00322 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 KRT17P6-201ENST00000453795 1220 ntBASIC16.42■□□□□ 0.22
UPK1AO00322 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 AL139327.4-201ENST00000612362 153 ntBASIC16.42■□□□□ 0.22
UPK1AO00322 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
UPK1AO00322 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
UPK1AO00322 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
UPK1AO00322 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.42■□□□□ 0.22
UPK1AO00322 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.41■□□□□ 0.22
UPK1AO00322 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.41■□□□□ 0.22
UPK1AO00322 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.41■□□□□ 0.22
UPK1AO00322 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
UPK1AO00322 IGHV3-47-201ENST00000425060 335 ntBASIC16.41■□□□□ 0.22
UPK1AO00322 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.41■□□□□ 0.22
UPK1AO00322 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.41■□□□□ 0.22
UPK1AO00322 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.41■□□□□ 0.22
UPK1AO00322 AC109462.3-201ENST00000573934 613 ntBASIC16.41■□□□□ 0.22
UPK1AO00322 AC011467.2-201ENST00000598425 242 ntBASIC16.41■□□□□ 0.22
UPK1AO00322 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.41■□□□□ 0.22
UPK1AO00322 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 AL049757.1-201ENST00000616842 1596 ntBASIC16.41■□□□□ 0.22
UPK1AO00322 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.41■□□□□ 0.22
UPK1AO00322 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.41■□□□□ 0.22
UPK1AO00322 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 TP73-AS1-210ENST00000637775 1455 ntBASIC16.41■□□□□ 0.22
UPK1AO00322 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.41■□□□□ 0.22
UPK1AO00322 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UPK1AO00322 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.4■□□□□ 0.22
UPK1AO00322 NSUN5P1-202ENST00000421140 1535 ntBASIC16.4■□□□□ 0.22
UPK1AO00322 NSUN5P2-203ENST00000457352 1529 ntBASIC16.4■□□□□ 0.22
UPK1AO00322 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms