Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC58Q4VC31 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PRORSD1P-201ENST00000295112 541 ntBASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AP000523.1-201ENST00000398242 1049 ntBASIC15.54■□□□□ 0.08
CCDC58Q4VC31 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AC060834.1-201ENST00000443027 2032 ntBASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC58Q4VC31 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 GCSHP5-201ENST00000443090 522 ntBASIC15.53■□□□□ 0.08
CCDC58Q4VC31 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 MIR4785-201ENST00000585005 73 ntBASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC58Q4VC31 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms