Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
AP3S2P59780 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
AP3S2P59780 AC079328.2-201ENST00000561241 3354 ntBASIC14.93□□□□□ -0.02
AP3S2P59780 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
AP3S2P59780 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
AP3S2P59780 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
AP3S2P59780 LINC00554-201ENST00000564841 3011 ntBASIC14.92□□□□□ -0.02
AP3S2P59780 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 FSCN1P1-201ENST00000568912 1481 ntBASIC14.92□□□□□ -0.02
AP3S2P59780 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.92□□□□□ -0.02
AP3S2P59780 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP3S2P59780 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.92□□□□□ -0.02
AP3S2P59780 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
AP3S2P59780 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
AP3S2P59780 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.91□□□□□ -0.02
AP3S2P59780 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.91□□□□□ -0.02
AP3S2P59780 AC011506.1-201ENST00000474329 610 ntBASIC14.91□□□□□ -0.02
AP3S2P59780 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.91□□□□□ -0.02
AP3S2P59780 UNC93B5-201ENST00000530315 699 ntBASIC14.91□□□□□ -0.02
AP3S2P59780 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 AC124947.2-201ENST00000547118 1133 ntBASIC14.91□□□□□ -0.02
AP3S2P59780 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC14.91□□□□□ -0.02
AP3S2P59780 AL139327.4-201ENST00000612362 153 ntBASIC14.91□□□□□ -0.02
AP3S2P59780 AC112497.1-201ENST00000624824 639 ntBASIC14.91□□□□□ -0.02
AP3S2P59780 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.91□□□□□ -0.02
AP3S2P59780 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
AP3S2P59780 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.91□□□□□ -0.02
AP3S2P59780 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
AP3S2P59780 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP3S2P59780 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.91□□□□□ -0.02
AP3S2P59780 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
AP3S2P59780 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
AP3S2P59780 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.9□□□□□ -0.02
AP3S2P59780 AC092171.3-201ENST00000610122 2651 ntBASIC14.9□□□□□ -0.02
AP3S2P59780 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.9□□□□□ -0.02
AP3S2P59780 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.9□□□□□ -0.02
AP3S2P59780 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
AP3S2P59780 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
AP3S2P59780 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms