Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC01451-201ENST00000623792 534 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.46■□□□□ 0.23
COL5A1P20908 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL5A1P20908 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.46■□□□□ 0.23
COL5A1P20908 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.46■□□□□ 0.23
COL5A1P20908 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.46■□□□□ 0.23
COL5A1P20908 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.46■□□□□ 0.23
COL5A1P20908 BASP1P1-201ENST00000430708 665 ntBASIC16.46■□□□□ 0.23
COL5A1P20908 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.46■□□□□ 0.23
COL5A1P20908 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
COL5A1P20908 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.46■□□□□ 0.23
COL5A1P20908 AL390754.1-201ENST00000619088 582 ntBASIC16.46■□□□□ 0.23
COL5A1P20908 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 WASH6P-202ENST00000359512 1437 ntBASIC16.46■□□□□ 0.23
COL5A1P20908 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL5A1P20908 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL5A1P20908 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.46■□□□□ 0.22
COL5A1P20908 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
COL5A1P20908 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.45■□□□□ 0.22
COL5A1P20908 TREML5P-201ENST00000421694 576 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 RBPMS2P1-201ENST00000437762 623 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.45■□□□□ 0.22
COL5A1P20908 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.45■□□□□ 0.22
COL5A1P20908 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 TERF1P3-201ENST00000505638 1227 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.45■□□□□ 0.22
COL5A1P20908 AL139327.4-201ENST00000612362 153 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.45■□□□□ 0.22
COL5A1P20908 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 HMGA1P7-201ENST00000406908 502 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 AC092580.3-201ENST00000430932 139 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 CRB3P1-201ENST00000449338 276 ntBASIC16.45■□□□□ 0.22
COL5A1P20908 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.45■□□□□ 0.22
COL5A1P20908 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.45■□□□□ 0.22
COL5A1P20908 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL5A1P20908 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
COL5A1P20908 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.45■□□□□ 0.22
COL5A1P20908 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
COL5A1P20908 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
COL5A1P20908 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL5A1P20908 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.44■□□□□ 0.22
COL5A1P20908 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.44■□□□□ 0.22
COL5A1P20908 AC005034.1-201ENST00000426657 489 ntBASIC16.44■□□□□ 0.22
COL5A1P20908 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.44■□□□□ 0.22
COL5A1P20908 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.44■□□□□ 0.22
COL5A1P20908 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.44■□□□□ 0.22
COL5A1P20908 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.44■□□□□ 0.22
COL5A1P20908 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL5A1P20908 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL5A1P20908 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL5A1P20908 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
COL5A1P20908 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms