Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 AL353807.1-201ENST00000427475 662 ntBASIC17.47■□□□□ 0.39
VIMP08670 MFAP1P1-201ENST00000442257 1255 ntBASIC17.47■□□□□ 0.39
VIMP08670 AC090192.1-201ENST00000517740 490 ntBASIC17.47■□□□□ 0.39
VIMP08670 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 FSCN1P1-201ENST00000568912 1481 ntBASIC17.47■□□□□ 0.39
VIMP08670 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
VIMP08670 AC092850.2-201ENST00000623821 2697 ntBASIC17.46■□□□□ 0.39
VIMP08670 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.46■□□□□ 0.39
VIMP08670 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 AC133681.1-201ENST00000465482 601 ntBASIC17.46■□□□□ 0.39
VIMP08670 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 SLC25A1P4-201ENST00000567977 778 ntBASIC17.46■□□□□ 0.39
VIMP08670 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.46■□□□□ 0.39
VIMP08670 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VIMP08670 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
VIMP08670 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VIMP08670 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.46■□□□□ 0.38
VIMP08670 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
VIMP08670 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.45■□□□□ 0.38
VIMP08670 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.45■□□□□ 0.38
VIMP08670 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 CA15P1-201ENST00000481698 905 ntBASIC17.45■□□□□ 0.38
VIMP08670 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.45■□□□□ 0.38
VIMP08670 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VIMP08670 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.45■□□□□ 0.38
VIMP08670 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.45■□□□□ 0.38
VIMP08670 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VIMP08670 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 AC092364.2-201ENST00000596710 2692 ntBASIC17.44■□□□□ 0.38
VIMP08670 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.44■□□□□ 0.38
VIMP08670 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VIMP08670 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 MESTP1-201ENST00000404287 994 ntBASIC17.44■□□□□ 0.38
VIMP08670 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms