Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.97■□□□□ 0.95
COL4A1P02462 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.97■□□□□ 0.95
COL4A1P02462 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL4A1P02462 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.97■□□□□ 0.95
COL4A1P02462 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A1P02462 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A1P02462 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A1P02462 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A1P02462 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A1P02462 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A1P02462 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A1P02462 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.96■□□□□ 0.95
COL4A1P02462 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A1P02462 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 HLA-DRB6-201ENST00000411500 1235 ntBASIC20.96■□□□□ 0.95
COL4A1P02462 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.96■□□□□ 0.95
COL4A1P02462 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.96■□□□□ 0.95
COL4A1P02462 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A1P02462 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A1P02462 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A1P02462 AP001059.3-201ENST00000619053 235 ntBASIC20.96■□□□□ 0.95
COL4A1P02462 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.96■□□□□ 0.95
COL4A1P02462 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A1P02462 NOC2LP1-202ENST00000452600 2235 ntBASIC20.95■□□□□ 0.95
COL4A1P02462 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.95■□□□□ 0.94
COL4A1P02462 AL592309.1-201ENST00000443127 649 ntBASIC20.95■□□□□ 0.94
COL4A1P02462 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A1P02462 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A1P02462 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A1P02462 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL4A1P02462 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A1P02462 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A1P02462 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A1P02462 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL4A1P02462 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 RNU1-129P-201ENST00000384064 167 ntBASIC20.94■□□□□ 0.94
COL4A1P02462 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A1P02462 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC20.94■□□□□ 0.94
COL4A1P02462 AL671277.1-201ENST00000429656 993 ntBASIC20.94■□□□□ 0.94
COL4A1P02462 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.94■□□□□ 0.94
COL4A1P02462 LINC01225-203ENST00000563550 1244 ntBASIC20.94■□□□□ 0.94
COL4A1P02462 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 U1.21-201ENST00000580816 167 ntBASIC20.94■□□□□ 0.94
COL4A1P02462 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A1P02462 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
COL4A1P02462 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A1P02462 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A1P02462 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL4A1P02462 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.93■□□□□ 0.94
COL4A1P02462 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.93■□□□□ 0.94
COL4A1P02462 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
COL4A1P02462 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
COL4A1P02462 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms