Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.84■□□□□ 0.77
USP28Q96RU2 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.84■□□□□ 0.77
USP28Q96RU2 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.84■□□□□ 0.77
USP28Q96RU2 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.84■□□□□ 0.77
USP28Q96RU2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.84■□□□□ 0.77
USP28Q96RU2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
USP28Q96RU2 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 TP73-AS1-210ENST00000637775 1455 ntBASIC19.84■□□□□ 0.77
USP28Q96RU2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
USP28Q96RU2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.84■□□□□ 0.77
USP28Q96RU2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP28Q96RU2 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP28Q96RU2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.83■□□□□ 0.77
USP28Q96RU2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP28Q96RU2 TSSC2-201ENST00000450217 709 ntBASIC19.83■□□□□ 0.77
USP28Q96RU2 STK19B-204ENST00000512515 211 ntBASIC19.83■□□□□ 0.77
USP28Q96RU2 TPSP2-201ENST00000561760 610 ntBASIC19.83■□□□□ 0.77
USP28Q96RU2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.83■□□□□ 0.77
USP28Q96RU2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
USP28Q96RU2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.83■□□□□ 0.76
USP28Q96RU2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP28Q96RU2 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
USP28Q96RU2 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP28Q96RU2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
USP28Q96RU2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.83■□□□□ 0.76
USP28Q96RU2 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP28Q96RU2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 KRT18P1-202ENST00000452408 1331 ntBASIC19.82■□□□□ 0.76
USP28Q96RU2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
USP28Q96RU2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 VENTXP7-201ENST00000475503 772 ntBASIC19.82■□□□□ 0.76
USP28Q96RU2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 AC124947.2-201ENST00000547118 1133 ntBASIC19.82■□□□□ 0.76
USP28Q96RU2 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.82■□□□□ 0.76
USP28Q96RU2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
USP28Q96RU2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.82■□□□□ 0.76
USP28Q96RU2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP28Q96RU2 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.81■□□□□ 0.76
USP28Q96RU2 AC092171.3-201ENST00000610122 2651 ntBASIC19.81■□□□□ 0.76
USP28Q96RU2 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.81■□□□□ 0.76
USP28Q96RU2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.81■□□□□ 0.76
USP28Q96RU2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 PCED1CP-201ENST00000419887 785 ntBASIC19.81■□□□□ 0.76
USP28Q96RU2 DRAXINP1-201ENST00000437611 948 ntBASIC19.81■□□□□ 0.76
USP28Q96RU2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.81■□□□□ 0.76
USP28Q96RU2 BNIP3P18-201ENST00000593976 575 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms