Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.02□□□□□ -0.01
COL12A1Q99715 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL12A1Q99715 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL12A1Q99715 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.02□□□□□ -0.01
COL12A1Q99715 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL12A1Q99715 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL12A1Q99715 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.01□□□□□ -0.01
COL12A1Q99715 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL12A1Q99715 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 AP006294.1-201ENST00000415407 339 ntBASIC15.01□□□□□ -0.01
COL12A1Q99715 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.01□□□□□ -0.01
COL12A1Q99715 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 MIR346-201ENST00000362234 95 ntBASIC15.01□□□□□ -0.01
COL12A1Q99715 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.01□□□□□ -0.01
COL12A1Q99715 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.01□□□□□ -0.01
COL12A1Q99715 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.01□□□□□ -0.01
COL12A1Q99715 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL12A1Q99715 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL12A1Q99715 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 ALG1L8P-201ENST00000533887 760 ntBASIC15□□□□□ -0.01
COL12A1Q99715 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 CHCHD2P3-201ENST00000603038 451 ntBASIC15□□□□□ -0.01
COL12A1Q99715 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15□□□□□ -0.01
COL12A1Q99715 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 ACTBP11-201ENST00000436287 1126 ntBASIC15□□□□□ -0.01
COL12A1Q99715 AP000842.3-202ENST00000569238 1080 ntBASIC15□□□□□ -0.01
COL12A1Q99715 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL12A1Q99715 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
COL12A1Q99715 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL12A1Q99715 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 AC098614.1-201ENST00000368528 745 ntBASIC14.99□□□□□ -0.01
COL12A1Q99715 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.99□□□□□ -0.01
COL12A1Q99715 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL12A1Q99715 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.99□□□□□ -0.01
COL12A1Q99715 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.99□□□□□ -0.01
COL12A1Q99715 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 AC009336.1-201ENST00000608941 1553 ntBASIC14.99□□□□□ -0.01
COL12A1Q99715 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 MIR6775-201ENST00000617557 69 ntBASIC14.99□□□□□ -0.01
COL12A1Q99715 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.99□□□□□ -0.01
COL12A1Q99715 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL12A1Q99715 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms