Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.42■□□□□ 0.06
MMP28Q9H239 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.42■□□□□ 0.06
MMP28Q9H239 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.42■□□□□ 0.06
MMP28Q9H239 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MMP28Q9H239 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.42■□□□□ 0.06
MMP28Q9H239 AP005242.2-201ENST00000580065 1175 ntBASIC15.42■□□□□ 0.06
MMP28Q9H239 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.42■□□□□ 0.06
MMP28Q9H239 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
MMP28Q9H239 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.42■□□□□ 0.06
MMP28Q9H239 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
MMP28Q9H239 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 KRT8P3-201ENST00000519669 1449 ntBASIC15.42■□□□□ 0.06
MMP28Q9H239 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.42■□□□□ 0.06
MMP28Q9H239 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MMP28Q9H239 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 AC092068.3-201ENST00000587894 2016 ntBASIC15.41■□□□□ 0.06
MMP28Q9H239 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.41■□□□□ 0.06
MMP28Q9H239 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.41■□□□□ 0.06
MMP28Q9H239 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
MMP28Q9H239 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 LYSMD4-203ENST00000378904 2122 ntBASIC15.41■□□□□ 0.06
MMP28Q9H239 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.41■□□□□ 0.06
MMP28Q9H239 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
MMP28Q9H239 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MMP28Q9H239 AC092171.3-201ENST00000610122 2651 ntBASIC15.4■□□□□ 0.06
MMP28Q9H239 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 AC024909.3-201ENST00000611513 2257 ntBASIC15.4■□□□□ 0.06
MMP28Q9H239 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms