Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.16■□□□□ 0.5
LIMD1Q9UGP4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AC138761.1-201ENST00000584393 385 ntBASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AC090164.3-201ENST00000610780 2143 ntBASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AC091812.2-201ENST00000619081 385 ntBASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AL805961.1-202ENST00000641562 540 ntBASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AC005332.8-201ENST00000622750 2735 ntBASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMD1Q9UGP4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIMD1Q9UGP4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC004461.1-201ENST00000412461 403 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC025678.2-201ENST00000562061 970 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 OR7E47P-204ENST00000575924 449 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AL513210.1-201ENST00000629608 234 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC007064.4-201ENST00000637740 555 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AL031598.1-201ENST00000561511 1773 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 AC135050.7-201ENST00000624508 2218 ntBASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMD1Q9UGP4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMD1Q9UGP4 HLA-J-203ENST00000494367 1087 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms