Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 IGHV3-62-201ENST00000520057 340 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 AC109635.5-201ENST00000533593 962 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SLC25A39P2-201ENST00000537614 270 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 LINC02560-201ENST00000596379 459 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 LINC01451-201ENST00000623792 534 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
RC3H1Q5TC82 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.74■■□□□ 1.07
RC3H1Q5TC82 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.74■■□□□ 1.07
RC3H1Q5TC82 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 UXT-AS1-201ENST00000590504 1525 ntBASIC21.73■■□□□ 1.07
RC3H1Q5TC82 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RC3H1Q5TC82 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 AC012569.1-201ENST00000591191 1524 ntBASIC21.72■■□□□ 1.07
RC3H1Q5TC82 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RC3H1Q5TC82 AC097493.3-201ENST00000509725 367 ntBASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms