Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCNFP41002 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.57■□□□□ 0.4
CCNFP41002 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.57■□□□□ 0.4
CCNFP41002 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.57■□□□□ 0.4
CCNFP41002 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.57■□□□□ 0.4
CCNFP41002 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCNFP41002 AC116407.4-201ENST00000623319 1061 ntBASIC17.57■□□□□ 0.4
CCNFP41002 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.57■□□□□ 0.4
CCNFP41002 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCNFP41002 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
CCNFP41002 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
CCNFP41002 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCNFP41002 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.56■□□□□ 0.4
CCNFP41002 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.56■□□□□ 0.4
CCNFP41002 KRT8P26-201ENST00000534154 1276 ntBASIC17.56■□□□□ 0.4
CCNFP41002 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.56■□□□□ 0.4
CCNFP41002 AC091076.1-201ENST00000610741 619 ntBASIC17.56■□□□□ 0.4
CCNFP41002 AP000550.4-202ENST00000639755 178 ntBASIC17.56■□□□□ 0.4
CCNFP41002 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCNFP41002 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.56■□□□□ 0.4
CCNFP41002 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.56■□□□□ 0.4
CCNFP41002 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 IER3-202ENST00000376377 1350 ntBASIC17.55■□□□□ 0.4
CCNFP41002 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.55■□□□□ 0.4
CCNFP41002 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.55■□□□□ 0.4
CCNFP41002 GUSBP12-201ENST00000513727 720 ntBASIC17.55■□□□□ 0.4
CCNFP41002 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 AC090616.6-201ENST00000582640 721 ntBASIC17.55■□□□□ 0.4
CCNFP41002 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.55■□□□□ 0.4
CCNFP41002 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCNFP41002 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCNFP41002 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCNFP41002 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCNFP41002 AC046185.3-201ENST00000623228 1824 ntBASIC17.54■□□□□ 0.4
CCNFP41002 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCNFP41002 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms