Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 TPT1-202ENST00000379055 948 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 DUX4L9-201ENST00000449051 1259 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 MYLKP1-201ENST00000509077 1580 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 LINC02012-201ENST00000608206 1725 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 PPT1-215ENST00000641471 2368 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 AC018553.1-201ENST00000616682 1458 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 AC041040.2-201ENST00000622926 2899 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 CNTNAP3P2-201ENST00000617175 3861 ntBASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC01558Q9Y6Z2 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC01558Q9Y6Z2 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC9□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms