Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TNFP01375 AP002414.1-201ENST00000391405 1147 ntBASIC17.03■□□□□ 0.32
TNFP01375 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 SLC25A6P5-201ENST00000435663 894 ntBASIC17.03■□□□□ 0.32
TNFP01375 PRSS29P-201ENST00000440800 595 ntBASIC17.03■□□□□ 0.32
TNFP01375 VN2R19P-201ENST00000442399 1052 ntBASIC17.03■□□□□ 0.32
TNFP01375 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.03■□□□□ 0.32
TNFP01375 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.03■□□□□ 0.32
TNFP01375 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.03■□□□□ 0.32
TNFP01375 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.03■□□□□ 0.32
TNFP01375 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.03■□□□□ 0.32
TNFP01375 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.03■□□□□ 0.32
TNFP01375 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TNFP01375 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
TNFP01375 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.03■□□□□ 0.32
TNFP01375 PKD1P1-201ENST00000458669 6805 ntBASIC17.02■□□□□ 0.32
TNFP01375 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
TNFP01375 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.02■□□□□ 0.32
TNFP01375 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
TNFP01375 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 MRPL20P1-201ENST00000400819 433 ntBASIC17.02■□□□□ 0.32
TNFP01375 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TNFP01375 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.02■□□□□ 0.32
TNFP01375 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TNFP01375 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.02■□□□□ 0.32
TNFP01375 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
TNFP01375 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.02■□□□□ 0.31
TNFP01375 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.02■□□□□ 0.31
TNFP01375 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.02■□□□□ 0.31
TNFP01375 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TNFP01375 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
TNFP01375 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.01■□□□□ 0.31
TNFP01375 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.01■□□□□ 0.31
TNFP01375 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.01■□□□□ 0.31
TNFP01375 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TNFP01375 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.01■□□□□ 0.31
TNFP01375 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.01■□□□□ 0.31
TNFP01375 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.01■□□□□ 0.31
TNFP01375 DNAJB3-201ENST00000446806 729 ntBASIC17.01■□□□□ 0.31
TNFP01375 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.01■□□□□ 0.31
TNFP01375 AC002347.1-201ENST00000569543 541 ntBASIC17.01■□□□□ 0.31
TNFP01375 MIR3687-2-201ENST00000577708 61 ntBASIC17.01■□□□□ 0.31
TNFP01375 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.01■□□□□ 0.31
TNFP01375 MIR3687-1-201ENST00000614492 61 ntBASIC17.01■□□□□ 0.31
TNFP01375 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TNFP01375 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TNFP01375 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms