Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 AC100803.2-201ENST00000562459 1963 ntBASIC16.98■□□□□ 0.31
VPS4AQ9UN37 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 OR6D1P-203ENST00000641209 4860 ntBASIC16.98■□□□□ 0.31
VPS4AQ9UN37 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4AQ9UN37 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AL355312.1-201ENST00000407115 2176 ntBASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AC108860.2-201ENST00000562760 2183 ntBASIC16.97■□□□□ 0.31
VPS4AQ9UN37 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AL590627.1-203ENST00000421194 1026 ntBASIC16.97■□□□□ 0.31
VPS4AQ9UN37 PMS2P1-201ENST00000431037 1228 ntBASIC16.97■□□□□ 0.31
VPS4AQ9UN37 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 BX640515.1-201ENST00000617215 977 ntBASIC16.97■□□□□ 0.31
VPS4AQ9UN37 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4AQ9UN37 LINC00167-201ENST00000530583 1419 ntBASIC16.96■□□□□ 0.31
VPS4AQ9UN37 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AL136038.4-201ENST00000603606 1261 ntBASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AC064862.7-201ENST00000604520 867 ntBASIC16.96■□□□□ 0.31
VPS4AQ9UN37 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AC141586.5-201ENST00000624546 2050 ntBASIC16.96■□□□□ 0.31
VPS4AQ9UN37 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS4AQ9UN37 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
VPS4AQ9UN37 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AC138894.3-201ENST00000603787 634 ntBASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AC116407.2-201ENST00000613639 860 ntBASIC16.95■□□□□ 0.3
VPS4AQ9UN37 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 AL157888.1-201ENST00000631930 593 ntBASIC16.95■□□□□ 0.3
VPS4AQ9UN37 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VPS4AQ9UN37 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms