Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 AL031008.1-201ENST00000619963 541 ntBASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 CROCCP2-202ENST00000412962 2773 ntBASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 SIRPAP1-201ENST00000448467 1770 ntBASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD3Q3KNS1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 AC079781.3-201ENST00000449110 356 ntBASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD3Q3KNS1 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 LYSMD4-203ENST00000378904 2122 ntBASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AC096582.2-201ENST00000510860 516 ntBASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 BNIP3P18-201ENST00000593976 575 ntBASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 KRT8P10-201ENST00000450021 1447 ntBASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 AL023806.1-201ENST00000603994 1649 ntBASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD3Q3KNS1 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 KRT16P4-201ENST00000453883 522 ntBASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 AC009078.2-202ENST00000463353 338 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms