Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 KRT18P29-201ENST00000397031 1267 ntBASIC14.36□□□□□ -0.11
NKX2-1P43699 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.36□□□□□ -0.11
NKX2-1P43699 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC14.36□□□□□ -0.11
NKX2-1P43699 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
NKX2-1P43699 AC010240.3-201ENST00000607688 395 ntBASIC14.36□□□□□ -0.11
NKX2-1P43699 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
NKX2-1P43699 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 LYSMD4-203ENST00000378904 2122 ntBASIC14.35□□□□□ -0.11
NKX2-1P43699 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.35□□□□□ -0.11
NKX2-1P43699 RPPH1-201ENST00000516869 333 ntBASIC14.35□□□□□ -0.11
NKX2-1P43699 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC14.35□□□□□ -0.11
NKX2-1P43699 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
NKX2-1P43699 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
NKX2-1P43699 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX2-1P43699 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX2-1P43699 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
NKX2-1P43699 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX2-1P43699 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
NKX2-1P43699 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX2-1P43699 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX2-1P43699 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NKX2-1P43699 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NKX2-1P43699 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX2-1P43699 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
NKX2-1P43699 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX2-1P43699 AC116353.5-201ENST00000638148 1699 ntBASIC14.34□□□□□ -0.11
NKX2-1P43699 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
NKX2-1P43699 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms