Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AL031133.1-201ENST00000406807 723 ntBASIC13.36□□□□□ -0.27
HLA-DMBP28068 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 CLN6-204ENST00000564752 900 ntTSL 3 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AC009154.2-201ENST00000621177 724 ntBASIC13.36□□□□□ -0.27
HLA-DMBP28068 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
HLA-DMBP28068 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 LYSMD4-203ENST00000378904 2122 ntBASIC13.36□□□□□ -0.27
HLA-DMBP28068 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HLA-DMBP28068 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 STARP1-201ENST00000397973 869 ntBASIC13.35□□□□□ -0.27
HLA-DMBP28068 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 AL671277.2-201ENST00000458060 996 ntBASIC13.35□□□□□ -0.27
HLA-DMBP28068 AP003733.1-201ENST00000491725 852 ntBASIC13.35□□□□□ -0.27
HLA-DMBP28068 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 CD320-202ENST00000537716 1119 ntTSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 AC091076.1-201ENST00000610741 619 ntBASIC13.35□□□□□ -0.27
HLA-DMBP28068 AL358472.4-201ENST00000633140 710 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms