Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA1Q9Y5H4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
PCDHGA1Q9Y5H4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.66■■□□□ 1.38
PCDHGA1Q9Y5H4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHGA1Q9Y5H4 AL139393.2-201ENST00000608721 2025 ntBASIC23.66■■□□□ 1.38
PCDHGA1Q9Y5H4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDHGA1Q9Y5H4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHGA1Q9Y5H4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHGA1Q9Y5H4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
PCDHGA1Q9Y5H4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHGA1Q9Y5H4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHGA1Q9Y5H4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA1Q9Y5H4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA1Q9Y5H4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA1Q9Y5H4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
PCDHGA1Q9Y5H4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA1Q9Y5H4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 LONRF2P2-201ENST00000439212 571 ntBASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 RPS2P7-201ENST00000447334 885 ntBASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHGA1Q9Y5H4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHGA1Q9Y5H4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHGA1Q9Y5H4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.61■■□□□ 1.37
PCDHGA1Q9Y5H4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHGA1Q9Y5H4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
PCDHGA1Q9Y5H4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.61■■□□□ 1.37
PCDHGA1Q9Y5H4 WHAMMP3-201ENST00000611636 1609 ntBASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHGA1Q9Y5H4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDHGA1Q9Y5H4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHGA1Q9Y5H4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDHGA1Q9Y5H4 AC008406.3-201ENST00000620001 1374 ntBASIC23.59■■□□□ 1.37
PCDHGA1Q9Y5H4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHGA1Q9Y5H4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.58■■□□□ 1.37
PCDHGA1Q9Y5H4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHGA1Q9Y5H4 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PCDHGA1Q9Y5H4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
PCDHGA1Q9Y5H4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHGA1Q9Y5H4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.57■■□□□ 1.36
PCDHGA1Q9Y5H4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 KRT18P10-201ENST00000388836 1287 ntBASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 AC022616.5-201ENST00000518796 181 ntBASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 KRT125P-201ENST00000546827 989 ntBASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
PCDHGA1Q9Y5H4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.55■■□□□ 1.36
PCDHGA1Q9Y5H4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHGA1Q9Y5H4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHGA1Q9Y5H4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHGA1Q9Y5H4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.54■■□□□ 1.36
PCDHGA1Q9Y5H4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 BX664725.1-201ENST00000438252 379 ntBASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA1Q9Y5H4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHGA1Q9Y5H4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
PCDHGA1Q9Y5H4 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHGA1Q9Y5H4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHGA1Q9Y5H4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHGA1Q9Y5H4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA1Q9Y5H4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHGA1Q9Y5H4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHGA1Q9Y5H4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.51■■□□□ 1.35
PCDHGA1Q9Y5H4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHGA1Q9Y5H4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHGA1Q9Y5H4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHGA1Q9Y5H4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
PCDHGA1Q9Y5H4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
PCDHGA1Q9Y5H4 MIR4787-201ENST00000607364 84 ntBASIC23.5■■□□□ 1.35
PCDHGA1Q9Y5H4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms