Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
NOTCH3Q9UM47 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NOTCH3Q9UM47 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC18.68■□□□□ 0.58
NOTCH3Q9UM47 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 AP002414.2-202ENST00000590929 1450 ntBASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NOTCH3Q9UM47 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
NOTCH3Q9UM47 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NOTCH3Q9UM47 MIR3960-201ENST00000583311 91 ntBASIC18.66■□□□□ 0.58
NOTCH3Q9UM47 AC018755.3-202ENST00000596210 929 ntBASIC18.66■□□□□ 0.58
NOTCH3Q9UM47 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NOTCH3Q9UM47 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NOTCH3Q9UM47 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 AC239859.2-201ENST00000444165 318 ntBASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 WHAMMP3-201ENST00000611636 1609 ntBASIC18.64■□□□□ 0.57
NOTCH3Q9UM47 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 AL031848.2-201ENST00000607670 837 ntBASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NOTCH3Q9UM47 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.62■□□□□ 0.57
NOTCH3Q9UM47 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.62■□□□□ 0.57
NOTCH3Q9UM47 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.62■□□□□ 0.57
NOTCH3Q9UM47 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
NOTCH3Q9UM47 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.62■□□□□ 0.57
NOTCH3Q9UM47 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 Z92544.1-202ENST00000571933 1220 ntBASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NOTCH3Q9UM47 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.6■□□□□ 0.57
NOTCH3Q9UM47 SHF-206ENST00000560471 2499 ntTSL 5 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 161.3 ms