Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
LYSMD3Q7Z3D4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
LYSMD3Q7Z3D4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.51■■□□□ 1.51
LYSMD3Q7Z3D4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
LYSMD3Q7Z3D4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
LYSMD3Q7Z3D4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.5■■□□□ 1.51
LYSMD3Q7Z3D4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
LYSMD3Q7Z3D4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.5■■□□□ 1.51
LYSMD3Q7Z3D4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
LYSMD3Q7Z3D4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
LYSMD3Q7Z3D4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 AC007029.1-201ENST00000604183 313 ntBASIC24.48■■□□□ 1.51
LYSMD3Q7Z3D4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.47■■□□□ 1.51
LYSMD3Q7Z3D4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.47■■□□□ 1.51
LYSMD3Q7Z3D4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
LYSMD3Q7Z3D4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.47■■□□□ 1.51
LYSMD3Q7Z3D4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
LYSMD3Q7Z3D4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
LYSMD3Q7Z3D4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.45■■□□□ 1.51
LYSMD3Q7Z3D4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.45■■□□□ 1.51
LYSMD3Q7Z3D4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
LYSMD3Q7Z3D4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
LYSMD3Q7Z3D4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
LYSMD3Q7Z3D4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 MIR3960-201ENST00000583311 91 ntBASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LYSMD3Q7Z3D4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.44■■□□□ 1.5
LYSMD3Q7Z3D4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
LYSMD3Q7Z3D4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LYSMD3Q7Z3D4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LYSMD3Q7Z3D4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LYSMD3Q7Z3D4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LYSMD3Q7Z3D4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LYSMD3Q7Z3D4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 RP9P-202ENST00000450133 1212 ntBASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.42■■□□□ 1.5
LYSMD3Q7Z3D4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LYSMD3Q7Z3D4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LYSMD3Q7Z3D4 ABHD17AP5-201ENST00000580133 923 ntBASIC24.41■■□□□ 1.5
LYSMD3Q7Z3D4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 AC093536.1-201ENST00000569153 554 ntBASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LYSMD3Q7Z3D4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
LYSMD3Q7Z3D4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
LYSMD3Q7Z3D4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.36■■□□□ 1.49
LYSMD3Q7Z3D4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LYSMD3Q7Z3D4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
LYSMD3Q7Z3D4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.36■■□□□ 1.49
LYSMD3Q7Z3D4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.36■■□□□ 1.49
LYSMD3Q7Z3D4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
LYSMD3Q7Z3D4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
LYSMD3Q7Z3D4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
LYSMD3Q7Z3D4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
LYSMD3Q7Z3D4 AC026202.3-201ENST00000600805 1127 ntBASIC24.34■■□□□ 1.49
LYSMD3Q7Z3D4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
LYSMD3Q7Z3D4 AC009831.1-201ENST00000580420 1582 ntBASIC24.33■■□□□ 1.49
LYSMD3Q7Z3D4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LYSMD3Q7Z3D4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LYSMD3Q7Z3D4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.33■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms