Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.59■□□□□ 0.89
USF1P22415 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.59■□□□□ 0.89
USF1P22415 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USF1P22415 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.58■□□□□ 0.89
USF1P22415 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USF1P22415 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 KRT8P33-201ENST00000508125 1423 ntBASIC20.57■□□□□ 0.88
USF1P22415 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.57■□□□□ 0.88
USF1P22415 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.57■□□□□ 0.88
USF1P22415 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USF1P22415 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 YBX1P4-201ENST00000392794 808 ntBASIC20.56■□□□□ 0.88
USF1P22415 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.56■□□□□ 0.88
USF1P22415 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.56■□□□□ 0.88
USF1P22415 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.56■□□□□ 0.88
USF1P22415 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
USF1P22415 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USF1P22415 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.54■□□□□ 0.88
USF1P22415 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USF1P22415 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USF1P22415 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.52■□□□□ 0.88
USF1P22415 AL359504.2-201ENST00000605506 1601 ntBASIC20.52■□□□□ 0.88
USF1P22415 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USF1P22415 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
USF1P22415 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USF1P22415 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.51■□□□□ 0.87
USF1P22415 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.5■□□□□ 0.87
USF1P22415 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.5■□□□□ 0.87
USF1P22415 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
USF1P22415 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.48■□□□□ 0.87
USF1P22415 BX255925.1-201ENST00000566954 1854 ntBASIC20.48■□□□□ 0.87
USF1P22415 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.48■□□□□ 0.87
USF1P22415 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.47■□□□□ 0.87
USF1P22415 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 WHAMMP3-201ENST00000611636 1609 ntBASIC20.46■□□□□ 0.87
USF1P22415 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 AC009299.2-201ENST00000482477 511 ntBASIC20.46■□□□□ 0.87
USF1P22415 AC103834.1-201ENST00000520383 144 ntBASIC20.46■□□□□ 0.87
USF1P22415 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.45■□□□□ 0.86
USF1P22415 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms