Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL4A1P02462 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL4A1P02462 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 AC139795.1-202ENST00000500444 432 ntBASIC30.37■■■□□ 2.45
COL4A1P02462 AC103724.3-201ENST00000564481 992 ntBASIC30.37■■■□□ 2.45
COL4A1P02462 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A1P02462 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.36■■■□□ 2.45
COL4A1P02462 MIR4508-201ENST00000584178 70 ntBASIC30.36■■■□□ 2.45
COL4A1P02462 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL4A1P02462 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.36■■■□□ 2.45
COL4A1P02462 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.35■■■□□ 2.45
COL4A1P02462 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
COL4A1P02462 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL4A1P02462 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.34■■■□□ 2.45
COL4A1P02462 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL4A1P02462 BHLHE23-202ENST00000612929 1109 ntBASIC30.34■■■□□ 2.45
COL4A1P02462 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL4A1P02462 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.33■■■□□ 2.45
COL4A1P02462 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL4A1P02462 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.33■■■□□ 2.45
COL4A1P02462 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL4A1P02462 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL4A1P02462 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A1P02462 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A1P02462 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A1P02462 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.31■■■□□ 2.44
COL4A1P02462 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A1P02462 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.31■■■□□ 2.44
COL4A1P02462 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
COL4A1P02462 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.3■■■□□ 2.44
COL4A1P02462 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A1P02462 LINC01003-201ENST00000564834 1764 ntBASIC30.3■■■□□ 2.44
COL4A1P02462 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A1P02462 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.3■■■□□ 2.44
COL4A1P02462 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A1P02462 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A1P02462 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
COL4A1P02462 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A1P02462 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.29■■■□□ 2.44
COL4A1P02462 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
COL4A1P02462 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A1P02462 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL4A1P02462 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.28■■■□□ 2.44
COL4A1P02462 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A1P02462 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A1P02462 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
COL4A1P02462 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.27■■■□□ 2.44
COL4A1P02462 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A1P02462 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A1P02462 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A1P02462 AC074183.2-201ENST00000623112 922 ntBASIC30.26■■■□□ 2.43
COL4A1P02462 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.25■■■□□ 2.43
COL4A1P02462 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A1P02462 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.24■■■□□ 2.43
COL4A1P02462 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A1P02462 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.24■■■□□ 2.43
COL4A1P02462 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.23■■■□□ 2.43
COL4A1P02462 AC018755.3-202ENST00000596210 929 ntBASIC30.23■■■□□ 2.43
COL4A1P02462 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL4A1P02462 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
COL4A1P02462 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
COL4A1P02462 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.22■■■□□ 2.43
COL4A1P02462 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.21■■■□□ 2.43
COL4A1P02462 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
COL4A1P02462 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A1P02462 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.21■■■□□ 2.43
COL4A1P02462 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A1P02462 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A1P02462 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
COL4A1P02462 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL4A1P02462 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
COL4A1P02462 GUSBP5-201ENST00000418136 578 ntBASIC30.2■■■□□ 2.43
COL4A1P02462 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.2■■■□□ 2.43
COL4A1P02462 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
COL4A1P02462 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.2■■■□□ 2.42
COL4A1P02462 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL4A1P02462 AC087393.1-201ENST00000582896 145 ntBASIC30.2■■■□□ 2.42
COL4A1P02462 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.19■■■□□ 2.42
COL4A1P02462 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL4A1P02462 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL4A1P02462 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL4A1P02462 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
COL4A1P02462 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
COL4A1P02462 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.17■■■□□ 2.42
COL4A1P02462 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
COL4A1P02462 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
COL4A1P02462 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A1P02462 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.17■■■□□ 2.42
COL4A1P02462 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A1P02462 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL4A1P02462 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms