Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC32.4■■■□□ 2.78
MSH5O43196 AC010980.1-201ENST00000587192 1142 ntBASIC32.4■■■□□ 2.78
MSH5O43196 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC32.39■■■□□ 2.78
MSH5O43196 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
MSH5O43196 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC32.39■■■□□ 2.78
MSH5O43196 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC32.39■■■□□ 2.78
MSH5O43196 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC32.39■■■□□ 2.78
MSH5O43196 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
MSH5O43196 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC32.38■■■□□ 2.77
MSH5O43196 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32.38■■■□□ 2.77
MSH5O43196 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
MSH5O43196 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
MSH5O43196 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC32.37■■■□□ 2.77
MSH5O43196 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
MSH5O43196 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC32.35■■■□□ 2.77
MSH5O43196 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
MSH5O43196 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH5O43196 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
MSH5O43196 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.34■■■□□ 2.77
MSH5O43196 AC009299.2-201ENST00000482477 511 ntBASIC32.34■■■□□ 2.77
MSH5O43196 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH5O43196 SMPD5-203ENST00000639008 1464 ntBASIC32.34■■■□□ 2.77
MSH5O43196 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH5O43196 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
MSH5O43196 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
MSH5O43196 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC32.33■■■□□ 2.77
MSH5O43196 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
MSH5O43196 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
MSH5O43196 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 DUX4L9-201ENST00000449051 1259 ntBASIC32.32■■■□□ 2.76
MSH5O43196 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
MSH5O43196 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH5O43196 THA1P-201ENST00000590384 1145 ntBASIC32.31■■■□□ 2.76
MSH5O43196 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
MSH5O43196 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.31■■■□□ 2.76
MSH5O43196 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC32.31■■■□□ 2.76
MSH5O43196 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
MSH5O43196 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC32.31■■■□□ 2.76
MSH5O43196 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC32.3■■■□□ 2.76
MSH5O43196 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
MSH5O43196 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC32.3■■■□□ 2.76
MSH5O43196 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
MSH5O43196 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC32.29■■■□□ 2.76
MSH5O43196 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
MSH5O43196 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC32.29■■■□□ 2.76
MSH5O43196 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
MSH5O43196 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC32.29■■■□□ 2.76
MSH5O43196 RP9P-202ENST00000450133 1212 ntBASIC32.29■■■□□ 2.76
MSH5O43196 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
MSH5O43196 AC026202.3-201ENST00000600805 1127 ntBASIC32.29■■■□□ 2.76
MSH5O43196 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
MSH5O43196 LTK-203ENST00000453182 2412 ntTSL 2 BASIC32.29■■■□□ 2.76
MSH5O43196 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC32.28■■■□□ 2.76
MSH5O43196 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC32.28■■■□□ 2.76
MSH5O43196 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC32.28■■■□□ 2.76
MSH5O43196 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
MSH5O43196 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
MSH5O43196 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC32.27■■■□□ 2.76
MSH5O43196 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC32.27■■■□□ 2.76
MSH5O43196 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC32.27■■■□□ 2.76
MSH5O43196 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
MSH5O43196 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
MSH5O43196 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
MSH5O43196 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.76
MSH5O43196 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
MSH5O43196 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.26■■■□□ 2.75
MSH5O43196 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC32.26■■■□□ 2.75
MSH5O43196 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.26■■■□□ 2.75
MSH5O43196 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
MSH5O43196 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
MSH5O43196 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC32.25■■■□□ 2.75
MSH5O43196 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
MSH5O43196 YBX1P4-201ENST00000392794 808 ntBASIC32.25■■■□□ 2.75
MSH5O43196 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
MSH5O43196 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
MSH5O43196 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
MSH5O43196 HES6-204ENST00000409182 863 ntTSL 2 BASIC32.24■■■□□ 2.75
MSH5O43196 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
MSH5O43196 AC139795.1-202ENST00000500444 432 ntBASIC32.24■■■□□ 2.75
MSH5O43196 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
MSH5O43196 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC32.24■■■□□ 2.75
MSH5O43196 MEST-211ENST00000437945 1455 ntTSL 5 BASIC32.23■■■□□ 2.75
MSH5O43196 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
MSH5O43196 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC32.23■■■□□ 2.75
MSH5O43196 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC32.23■■■□□ 2.75
MSH5O43196 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC32.22■■■□□ 2.75
MSH5O43196 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
MSH5O43196 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC32.22■■■□□ 2.75
MSH5O43196 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC32.21■■■□□ 2.75
MSH5O43196 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
MSH5O43196 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms