Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.8■■□□□ 1.4
CACNA1AO00555 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CACNA1AO00555 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CACNA1AO00555 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CACNA1AO00555 AC097381.1-201ENST00000429019 1296 ntBASIC23.79■■□□□ 1.4
CACNA1AO00555 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.78■■□□□ 1.4
CACNA1AO00555 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.78■■□□□ 1.4
CACNA1AO00555 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CACNA1AO00555 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.78■■□□□ 1.4
CACNA1AO00555 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
CACNA1AO00555 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CACNA1AO00555 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CACNA1AO00555 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CACNA1AO00555 AC021242.3-201ENST00000607598 1377 ntBASIC23.78■■□□□ 1.4
CACNA1AO00555 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CACNA1AO00555 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CACNA1AO00555 AL512631.2-201ENST00000604634 923 ntBASIC23.77■■□□□ 1.4
CACNA1AO00555 AC092028.1-203ENST00000608262 953 ntBASIC23.77■■□□□ 1.4
CACNA1AO00555 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.77■■□□□ 1.4
CACNA1AO00555 RARRES2P11-201ENST00000635158 484 ntBASIC23.77■■□□□ 1.4
CACNA1AO00555 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CACNA1AO00555 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.77■■□□□ 1.4
CACNA1AO00555 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CACNA1AO00555 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CACNA1AO00555 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CACNA1AO00555 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CACNA1AO00555 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CACNA1AO00555 AC137630.3-201ENST00000607245 391 ntBASIC23.75■■□□□ 1.39
CACNA1AO00555 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.75■■□□□ 1.39
CACNA1AO00555 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CACNA1AO00555 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.74■■□□□ 1.39
CACNA1AO00555 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1AO00555 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.74■■□□□ 1.39
CACNA1AO00555 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.74■■□□□ 1.39
CACNA1AO00555 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.73■■□□□ 1.39
CACNA1AO00555 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.73■■□□□ 1.39
CACNA1AO00555 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1AO00555 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1AO00555 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
CACNA1AO00555 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.73■■□□□ 1.39
CACNA1AO00555 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1AO00555 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.73■■□□□ 1.39
CACNA1AO00555 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.72■■□□□ 1.39
CACNA1AO00555 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1AO00555 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1AO00555 AL161658.1-201ENST00000623641 1967 ntBASIC23.72■■□□□ 1.39
CACNA1AO00555 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1AO00555 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.71■■□□□ 1.39
CACNA1AO00555 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1AO00555 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CACNA1AO00555 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1AO00555 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1AO00555 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1AO00555 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1AO00555 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.69■■□□□ 1.38
CACNA1AO00555 RPS2P7-201ENST00000447334 885 ntBASIC23.69■■□□□ 1.38
CACNA1AO00555 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.69■■□□□ 1.38
CACNA1AO00555 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.69■■□□□ 1.38
CACNA1AO00555 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.69■■□□□ 1.38
CACNA1AO00555 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.69■■□□□ 1.38
CACNA1AO00555 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CACNA1AO00555 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CACNA1AO00555 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
CACNA1AO00555 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CACNA1AO00555 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CACNA1AO00555 KRT18P24-201ENST00000344739 1156 ntBASIC23.67■■□□□ 1.38
CACNA1AO00555 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.67■■□□□ 1.38
CACNA1AO00555 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.67■■□□□ 1.38
CACNA1AO00555 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CACNA1AO00555 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CACNA1AO00555 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
CACNA1AO00555 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CACNA1AO00555 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.66■■□□□ 1.38
CACNA1AO00555 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.66■■□□□ 1.38
CACNA1AO00555 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.65■■□□□ 1.38
CACNA1AO00555 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CACNA1AO00555 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.64■■□□□ 1.38
CACNA1AO00555 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CACNA1AO00555 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CACNA1AO00555 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CACNA1AO00555 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.64■■□□□ 1.37
CACNA1AO00555 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CACNA1AO00555 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CACNA1AO00555 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CACNA1AO00555 AL356740.2-201ENST00000601559 647 ntBASIC23.63■■□□□ 1.37
CACNA1AO00555 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.63■■□□□ 1.37
CACNA1AO00555 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1AO00555 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1AO00555 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1AO00555 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1AO00555 PBX2P1-201ENST00000493219 1291 ntBASIC23.62■■□□□ 1.37
CACNA1AO00555 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1AO00555 MIR6724-1-201ENST00000616420 92 ntBASIC23.62■■□□□ 1.37
CACNA1AO00555 MIR6724-2-201ENST00000616483 92 ntBASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms