Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.27■□□□□ 0.84
SF3A1Q15459 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SF3A1Q15459 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.27■□□□□ 0.84
SF3A1Q15459 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.27■□□□□ 0.84
SF3A1Q15459 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SF3A1Q15459 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SF3A1Q15459 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.27■□□□□ 0.83
SF3A1Q15459 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SF3A1Q15459 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
SF3A1Q15459 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SF3A1Q15459 AC009053.2-201ENST00000563701 2365 ntBASIC20.27■□□□□ 0.83
SF3A1Q15459 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SF3A1Q15459 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.26■□□□□ 0.83
SF3A1Q15459 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.26■□□□□ 0.83
SF3A1Q15459 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SF3A1Q15459 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SF3A1Q15459 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 AL671277.2-201ENST00000458060 996 ntBASIC20.26■□□□□ 0.83
SF3A1Q15459 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.26■□□□□ 0.83
SF3A1Q15459 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.26■□□□□ 0.83
SF3A1Q15459 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SF3A1Q15459 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
SF3A1Q15459 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.26■□□□□ 0.83
SF3A1Q15459 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.26■□□□□ 0.83
SF3A1Q15459 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SF3A1Q15459 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC20.25■□□□□ 0.83
SF3A1Q15459 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.25■□□□□ 0.83
SF3A1Q15459 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.25■□□□□ 0.83
SF3A1Q15459 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SF3A1Q15459 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.25■□□□□ 0.83
SF3A1Q15459 BX276092.7-203ENST00000637198 1536 ntBASIC20.25■□□□□ 0.83
SF3A1Q15459 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.25■□□□□ 0.83
SF3A1Q15459 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SF3A1Q15459 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SF3A1Q15459 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.24■□□□□ 0.83
SF3A1Q15459 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.24■□□□□ 0.83
SF3A1Q15459 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 TMPOP1-202ENST00000424642 1267 ntBASIC20.24■□□□□ 0.83
SF3A1Q15459 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.24■□□□□ 0.83
SF3A1Q15459 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.24■□□□□ 0.83
SF3A1Q15459 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.24■□□□□ 0.83
SF3A1Q15459 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
SF3A1Q15459 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.24■□□□□ 0.83
SF3A1Q15459 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SF3A1Q15459 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SF3A1Q15459 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SF3A1Q15459 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SF3A1Q15459 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms