Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 AL139327.4-201ENST00000612362 153 ntBASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 AC093028.1-201ENST00000622998 982 ntBASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC61Q9Y6R9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 GOLGA6L17P-202ENST00000614358 1398 ntBASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AC006116.8-202ENST00000587620 1550 ntBASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AL513480.1-201ENST00000451731 511 ntBASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AC087163.2-201ENST00000457299 853 ntBASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 AC106028.4-201ENST00000614509 607 ntBASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC61Q9Y6R9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 CYP51A1P2-201ENST00000419457 1499 ntBASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 ADH5P3-201ENST00000433842 1137 ntBASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 AC022145.2-201ENST00000598203 171 ntBASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 AC129492.6-201ENST00000611383 1305 ntBASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CCDC61Q9Y6R9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 HLA-J-203ENST00000494367 1087 ntBASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 TK1-204ENST00000590430 683 ntTSL 3 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC61Q9Y6R9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
CCDC61Q9Y6R9 LINC01451-201ENST00000623792 534 ntBASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms