Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 IGHV3-52-201ENST00000519770 353 ntBASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 AC239800.4-201ENST00000603712 296 ntBASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 AC116407.2-201ENST00000613639 860 ntBASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 AC105339.1-204ENST00000636249 355 ntBASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA1Q9Y5H4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 PHGDH-209ENST00000641074 1780 ntBASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 AC109462.3-201ENST00000573934 613 ntBASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 REXO1L3P-201ENST00000622202 1288 ntBASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 AC097637.2-201ENST00000624096 1997 ntBASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHGA1Q9Y5H4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 AL121761.2-201ENST00000598007 1648 ntBASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 AC092902.6-201ENST00000641783 218 ntBASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA1Q9Y5H4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AC004408.2-201ENST00000623613 2777 ntBASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms