Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 HLA-A-201ENST00000376802 1334 ntBASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA4Q9Y5G9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHGA4Q9Y5G9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 HCG24-202ENST00000414398 717 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 TSPY12P-201ENST00000421279 868 ntBASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 AL671883.3-201ENST00000603274 991 ntBASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 BX640515.1-201ENST00000617215 977 ntBASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA4Q9Y5G9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 IGHGP-201ENST00000390555 1178 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AC093010.1-201ENST00000473625 1624 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AL096828.2-201ENST00000567259 1965 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 OR6D1P-202ENST00000641007 5290 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 FLJ38576-201ENST00000623820 2459 ntBASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA4Q9Y5G9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA4Q9Y5G9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms