Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AC103702.1-201ENST00000548801 2630 ntBASIC13.49□□□□□ -0.25
HIST1H1AQ02539 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.49□□□□□ -0.25
HIST1H1AQ02539 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC022898.2-201ENST00000616822 1312 ntBASIC13.48□□□□□ -0.25
HIST1H1AQ02539 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC034232.1-201ENST00000506026 1064 ntBASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC141257.4-201ENST00000634557 245 ntBASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC136944.6-201ENST00000634818 245 ntBASIC13.48□□□□□ -0.25
HIST1H1AQ02539 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 AC108860.2-201ENST00000562760 2183 ntBASIC13.48□□□□□ -0.25
HIST1H1AQ02539 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HIST1H1AQ02539 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 AC140113.3-201ENST00000605663 199 ntBASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HIST1H1AQ02539 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms