Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 MIR4785-201ENST00000585005 73 ntBASIC15.51■□□□□ 0.07
SOX2P48431 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 AC092865.7-201ENST00000641832 219 ntBASIC15.51■□□□□ 0.07
SOX2P48431 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX2P48431 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX2P48431 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SOX2P48431 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SOX2P48431 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX2P48431 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SOX2P48431 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX2P48431 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
SOX2P48431 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX2P48431 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX2P48431 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX2P48431 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX2P48431 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX2P48431 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX2P48431 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.49■□□□□ 0.07
SOX2P48431 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX2P48431 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.49■□□□□ 0.07
SOX2P48431 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SOX2P48431 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX2P48431 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX2P48431 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX2P48431 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX2P48431 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX2P48431 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX2P48431 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX2P48431 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX2P48431 AL157888.1-201ENST00000631930 593 ntBASIC15.49■□□□□ 0.07
SOX2P48431 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
SOX2P48431 AC079328.2-201ENST00000561241 3354 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms