Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SSSCA1O60232 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.38□□□□□ -0.11
SSSCA1O60232 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SSSCA1O60232 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
SSSCA1O60232 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.38□□□□□ -0.11
SSSCA1O60232 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SSSCA1O60232 AC063926.3-201ENST00000624734 5658 ntBASIC14.37□□□□□ -0.11
SSSCA1O60232 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SSSCA1O60232 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC14.37□□□□□ -0.11
SSSCA1O60232 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.37□□□□□ -0.11
SSSCA1O60232 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.37□□□□□ -0.11
SSSCA1O60232 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 AL355802.2-201ENST00000402069 882 ntBASIC14.37□□□□□ -0.11
SSSCA1O60232 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.37□□□□□ -0.11
SSSCA1O60232 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.37□□□□□ -0.11
SSSCA1O60232 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.37□□□□□ -0.11
SSSCA1O60232 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
SSSCA1O60232 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SSSCA1O60232 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
SSSCA1O60232 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.37□□□□□ -0.11
SSSCA1O60232 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.37□□□□□ -0.11
SSSCA1O60232 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SSSCA1O60232 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.36□□□□□ -0.11
SSSCA1O60232 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SSSCA1O60232 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 AL603756.1-201ENST00000606511 2163 ntBASIC14.36□□□□□ -0.11
SSSCA1O60232 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.36□□□□□ -0.11
SSSCA1O60232 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SSSCA1O60232 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.36□□□□□ -0.11
SSSCA1O60232 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SSSCA1O60232 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SSSCA1O60232 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SSSCA1O60232 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SSSCA1O60232 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.36□□□□□ -0.11
SSSCA1O60232 AC104390.1-201ENST00000555663 520 ntBASIC14.36□□□□□ -0.11
SSSCA1O60232 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.36□□□□□ -0.11
SSSCA1O60232 MIR3180-4-201ENST00000582223 153 ntBASIC14.36□□□□□ -0.11
SSSCA1O60232 DGCR10-201ENST00000609839 495 ntBASIC14.36□□□□□ -0.11
SSSCA1O60232 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.36□□□□□ -0.11
SSSCA1O60232 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SSSCA1O60232 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SSSCA1O60232 LINC02199-201ENST00000506655 2702 ntBASIC14.35□□□□□ -0.11
SSSCA1O60232 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.35□□□□□ -0.11
SSSCA1O60232 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.35□□□□□ -0.11
SSSCA1O60232 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.35□□□□□ -0.11
SSSCA1O60232 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SSSCA1O60232 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms